Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 93627554
total bases: 14137760654
Q20 bases: 13828848594(97.815%)
Q30 bases: 13240236961(93.6516%)
Q40 bases: 13240236961(93.6516%)
Read2 before filtering:
total reads: 93627554
total bases: 14137760654
Q20 bases: 13687439554(96.8148%)
Q30 bases: 12900279765(91.247%)
Q40 bases: 12900279765(91.247%)
Read1 after filtering:
total reads: 92683454
total bases: 13265909184
Q20 bases: 13032407317(98.2398%)
Q30 bases: 12522053359(94.3927%)
Q40 bases: 12522053359(94.3927%)
Read2 after filtering:
total reads: 92683454
total bases: 13267350515
Q20 bases: 12933398798(97.4829%)
Q30 bases: 12260155708(92.4085%)
Q40 bases: 12260155708(92.4085%)
Filtering result:
reads passed filter: 185366908
reads failed due to low quality: 1861370
reads failed due to too many N: 24720
reads failed due to too short: 2110
reads with adapter trimmed: 42478971
bases trimmed due to adapters: 1462249786
Duplication rate: 11.6518%
Insert size peak (evaluated by paired-end reads): 154
JSON report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html
fastp --in1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L002_R1_001.fastq.gz --in2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_S23_L002_R2_001.fastq.gz --out1 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_HTI-T1-TDNA-1_A23MHWWLT4_1/1029_HTI-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4
fastp v1.0.1, time used: 592 seconds