cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cAd-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=659_cAd-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_cAd-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 659_cAd-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:117000001, elapsed 24.6s, est remaining 467.5s, peak mem 5915MB, user 606.2s, sys 10.2s, output queue size 58
progress 10% @chr2:42000001, elapsed 46.7s, est remaining 420.3s, peak mem 7739MB, user 1286.0s, sys 14.2s, output queue size 48
progress 15% @chr2:201000001, elapsed 75.1s, est remaining 425.4s, peak mem 9140MB, user 2092.6s, sys 18.9s, output queue size 122
progress 20% @chr3:174000001, elapsed 97.0s, est remaining 387.9s, peak mem 9533MB, user 2752.6s, sys 22.4s, output queue size 174
progress 25% @chr4:134000001, elapsed 116.7s, est remaining 350.1s, peak mem 9640MB, user 3358.2s, sys 25.6s, output queue size 302
progress 30% @chr4:105000001, elapsed 132.9s, est remaining 310.0s, peak mem 10020MB, user 3890.5s, sys 27.9s, output queue size 464
progress 35% @chr6:69000001, elapsed 152.7s, est remaining 283.6s, peak mem 10020MB, user 4437.1s, sys 30.6s, output queue size 625
progress 40% @chr7:79000001, elapsed 178.4s, est remaining 267.6s, peak mem 10381MB, user 5091.3s, sys 33.9s, output queue size 786
progress 45% @chr8:54000001, elapsed 206.3s, est remaining 252.1s, peak mem 10504MB, user 6019.6s, sys 37.5s, output queue size 204
progress 50% @chr9:89000001, elapsed 226.7s, est remaining 226.7s, peak mem 10834MB, user 6617.6s, sys 40.4s, output queue size 366
progress 55% @chr10:96000001, elapsed 251.6s, est remaining 205.8s, peak mem 10834MB, user 7354.2s, sys 43.8s, output queue size 527
progress 60% @chr12:3000001, elapsed 277.1s, est remaining 184.7s, peak mem 10834MB, user 8156.3s, sys 47.0s, output queue size 510
progress 65% @chr13:30000001, elapsed 306.1s, est remaining 164.8s, peak mem 10962MB, user 9007.3s, sys 50.5s, output queue size 672
progress 70% @chr14:60000001, elapsed 324.7s, est remaining 139.2s, peak mem 11322MB, user 9526.2s, sys 52.9s, output queue size 833
progress 75% @chr16:42000001, elapsed 352.1s, est remaining 117.4s, peak mem 11332MB, user 10399.8s, sys 56.9s, output queue size 461
progress 80% @chr18:2000001, elapsed 386.1s, est remaining 96.5s, peak mem 11332MB, user 11315.2s, sys 61.0s, output queue size 623
progress 85% @chr19:55000001, elapsed 414.2s, est remaining 73.1s, peak mem 11332MB, user 12212.8s, sys 64.4s, output queue size 785
progress 90% @chrX:18000001, elapsed 436.1s, est remaining 48.5s, peak mem 11495MB, user 12942.9s, sys 67.3s, output queue size 513
progress 95% @chrY:54000001, elapsed 452.1s, est remaining 23.8s, peak mem 11576MB, user 13496.4s, sys 69.7s, output queue size 439
progress 100% @chrX:67000001, elapsed 479.8s, est remaining 0.0s, peak mem 11580MB, user 13996.5s, sys 72.4s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 59984754244
output file size: 88857506872
reads: 1231081686
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.016 real
ReadQualCal::delayed_init: 1 calls 0.000 user 0.002 sys 0.019 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1355.780 user 20.947 sys 1420.298 real
done: 1 calls 0.539 user 0.268 sys 0.812 real
exec_no_coor: 1 calls 0.104 user 0.121 sys 0.243 real
execute: 1 calls 0.000 user 0.008 sys 480.386 real
fetch: 3219323 calls 76.960 user 0.380 sys 109.715 real
fetch_reads: 3219322 calls 241.716 user 1.089 sys 249.572 real
fetch_ref: 1870400 calls 6.484 user 1.389 sys 8.378 real
fetch_vcf: 1870400 calls 101.474 user 1.571 sys 108.290 real
idle: 41572 calls 18.297 user 0.341 sys 606.257 real
init: 1 calls 0.000 user 0.002 sys 0.025 real
update: 2113073 calls 2773.110 user 5.239 sys 2892.175 real
write: 3219323 calls 10248.009 user 37.249 sys 10380.078 real
overall: 12143341568 mem 14026.644 user 99.445 sys 482.445 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 659_cAd-T1-TDNA-1_A23MHWWLT4_1.table --after 659_cAd-T1-TDNA-1_A23MHWWLT4_1.table.post 659_cAd-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.044 user 0.006 sys 0.042 real
done: 1 calls 0.072 user 0.008 sys 0.078 real
idle: 61 calls 0.002 user 0.000 sys 31.309 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86720512 mem 0.102 user 0.027 sys 1.055 real