File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/183f621e760a5660773a32aaa500f3/.command.sh
Size
651 bytes
Task
DAQ:BAM_POSTDEDUP_QC:SENTIEON_HSMETRICS (1029_I9B-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

View in new tab 
#!/bin/bash -Ceuo pipefail
sentieon driver \
    -t 31 \
    -r Homo_sapiens_assembly38.fasta \
    -i 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md.bam \
     \
    --algo HsMetricAlgo \
    --targets_list targets/foresight_clarity_targets_hg38.bed \
    --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed \
    1029_I9B-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics

cat <<-END_VERSIONS > versions.yml
"DAQ:BAM_POSTDEDUP_QC:SENTIEON_HSMETRICS":
    sentieon: $(echo $(sentieon driver --version 2>&1) | sed -e "s/sentieon-genomics-//g")
END_VERSIONS