File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/10b0f2eb91bc6e273ef05175e3f22b/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_I9B-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.9s, est remaining 93.6s, peak mem 3831MB, user 102.6s, sys 3.3s, output queue size 150
progress 10% @chr2:46000001, elapsed 8.9s, est remaining 79.8s, peak mem 5014MB, user 237.3s, sys 7.9s, output queue size 117
progress 15% @chr2:224000001, elapsed 13.9s, est remaining 78.8s, peak mem 8662MB, user 382.4s, sys 10.2s, output queue size 203
progress 20% @chr3:175000001, elapsed 17.6s, est remaining 70.5s, peak mem 8693MB, user 494.5s, sys 12.6s, output queue size 283
progress 25% @chr4:129000001, elapsed 20.8s, est remaining 62.3s, peak mem 8755MB, user 602.1s, sys 13.8s, output queue size 302
progress 30% @chr5:83000001, elapsed 23.3s, est remaining 54.4s, peak mem 8797MB, user 670.4s, sys 14.3s, output queue size 464
progress 35% @chr6:44000001, elapsed 27.6s, est remaining 51.3s, peak mem 9635MB, user 782.3s, sys 15.5s, output queue size 625
progress 40% @chr7:66000001, elapsed 32.5s, est remaining 48.8s, peak mem 10478MB, user 911.4s, sys 16.7s, output queue size 786
progress 45% @chr8:78000001, elapsed 37.3s, est remaining 45.6s, peak mem 10839MB, user 1078.2s, sys 18.1s, output queue size 357
progress 50% @chr9:37000001, elapsed 40.9s, est remaining 40.9s, peak mem 10909MB, user 1189.4s, sys 19.2s, output queue size 366
progress 55% @chr10:104000001, elapsed 45.4s, est remaining 37.1s, peak mem 11156MB, user 1321.9s, sys 20.2s, output queue size 527
progress 60% @chr11:134000001, elapsed 49.9s, est remaining 33.2s, peak mem 11156MB, user 1461.8s, sys 21.4s, output queue size 510
progress 65% @chr13:24000001, elapsed 54.5s, est remaining 29.3s, peak mem 11210MB, user 1586.0s, sys 22.3s, output queue size 672
progress 70% @chr14:84000001, elapsed 57.2s, est remaining 24.5s, peak mem 11210MB, user 1670.2s, sys 23.0s, output queue size 833
progress 75% @chr16:42000001, elapsed 61.9s, est remaining 20.6s, peak mem 11210MB, user 1839.9s, sys 24.0s, output queue size 461
progress 80% @chr18:25000001, elapsed 68.7s, est remaining 17.2s, peak mem 11210MB, user 2025.0s, sys 25.3s, output queue size 623
progress 85% @chr19:42000001, elapsed 75.0s, est remaining 13.2s, peak mem 11210MB, user 2227.4s, sys 26.4s, output queue size 785
progress 90% @chrX:34000001, elapsed 80.4s, est remaining 8.9s, peak mem 11755MB, user 2404.3s, sys 28.0s, output queue size 513
progress 95% @chrY:53000001, elapsed 83.8s, est remaining 4.4s, peak mem 11755MB, user 2501.0s, sys 28.8s, output queue size 675
progress 100% @chrX:67000001, elapsed 94.5s, est remaining 0.0s, peak mem 11755MB, user 2636.6s, sys 29.7s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 81150013433
reads: 1554117329
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1255.723 user 26.211 sys 1282.214 real
done: 1 calls 0.017 user 0.038 sys 0.056 real
exec_no_coor: 1 calls 0.012 user 0.000 sys 0.016 real
execute: 1 calls 0.004 user 0.002 sys 94.538 real
idle: 314 calls 0.164 user 0.002 sys 294.174 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 12326227968 mem 2637.600 user 30.014 sys 95.920 real