File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/98e72efc3064341eb83eb3894e35b6/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_86S-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.5s, est remaining 85.1s, peak mem 3242MB, user 107.4s, sys 3.4s, output queue size 145
progress 10% @chr1:226000001, elapsed 8.2s, est remaining 73.8s, peak mem 4465MB, user 223.4s, sys 5.9s, output queue size 96
progress 15% @chr2:201000001, elapsed 12.3s, est remaining 69.5s, peak mem 5786MB, user 344.2s, sys 8.8s, output queue size 122
progress 20% @chr3:174000001, elapsed 15.7s, est remaining 63.0s, peak mem 5994MB, user 449.8s, sys 10.0s, output queue size 174
progress 25% @chr4:135000001, elapsed 18.9s, est remaining 56.6s, peak mem 6096MB, user 548.4s, sys 10.9s, output queue size 302
progress 30% @chr5:44000001, elapsed 21.3s, est remaining 49.7s, peak mem 6096MB, user 622.7s, sys 11.5s, output queue size 464
progress 35% @chr6:91000001, elapsed 24.9s, est remaining 46.2s, peak mem 6096MB, user 714.8s, sys 12.5s, output queue size 625
progress 40% @chr7:65000001, elapsed 28.9s, est remaining 43.4s, peak mem 6279MB, user 832.0s, sys 13.9s, output queue size 786
progress 45% @chr8:78000001, elapsed 33.3s, est remaining 40.6s, peak mem 6418MB, user 975.1s, sys 15.3s, output queue size 204
progress 50% @chr9:76000001, elapsed 36.7s, est remaining 36.7s, peak mem 6637MB, user 1067.2s, sys 16.2s, output queue size 366
progress 55% @chr10:115000001, elapsed 40.9s, est remaining 33.4s, peak mem 6775MB, user 1191.2s, sys 17.1s, output queue size 527
progress 60% @chr11:130000001, elapsed 44.8s, est remaining 29.9s, peak mem 6775MB, user 1328.2s, sys 18.2s, output queue size 510
progress 65% @chr12:106000001, elapsed 49.1s, est remaining 26.4s, peak mem 6775MB, user 1444.1s, sys 19.2s, output queue size 672
progress 70% @chr14:37000001, elapsed 52.1s, est remaining 22.3s, peak mem 6775MB, user 1527.7s, sys 20.0s, output queue size 833
progress 75% @chr16:42000001, elapsed 56.7s, est remaining 18.9s, peak mem 6775MB, user 1663.2s, sys 20.9s, output queue size 995
progress 80% @chr18:1, elapsed 62.7s, est remaining 15.7s, peak mem 6775MB, user 1848.6s, sys 22.3s, output queue size 623
progress 85% @chr20:18000001, elapsed 67.4s, est remaining 11.9s, peak mem 6775MB, user 2007.8s, sys 23.4s, output queue size 785
progress 90% @chr22:39000001, elapsed 70.7s, est remaining 7.9s, peak mem 6775MB, user 2128.3s, sys 24.2s, output queue size 513
progress 95% @chrY:54000001, elapsed 72.6s, est remaining 3.8s, peak mem 6775MB, user 2177.2s, sys 24.6s, output queue size 675
progress 100% @chr15:88000001, elapsed 79.0s, est remaining 0.0s, peak mem 6775MB, user 2268.7s, sys 25.2s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 69197258666
reads: 1424902378
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1092.608 user 22.239 sys 1117.333 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.023 sys 0.035 real
execute: 1 calls 0.002 user 0.001 sys 79.038 real
idle: 215 calls 0.166 user 0.001 sys 184.856 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7104720896 mem 2269.684 user 25.497 sys 80.352 real