cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_7GC-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 36.5s, est remaining 693.6s, peak mem 6248MB, user 889.4s, sys 8.6s, output queue size 52
progress 10% @chr2:79000001, elapsed 64.8s, est remaining 583.3s, peak mem 8038MB, user 1816.1s, sys 12.8s, output queue size 48
progress 15% @chr2:238000001, elapsed 95.0s, est remaining 538.4s, peak mem 8943MB, user 2721.2s, sys 17.5s, output queue size 122
progress 20% @chr3:154000001, elapsed 123.4s, est remaining 493.7s, peak mem 9089MB, user 3579.4s, sys 21.1s, output queue size 141
progress 25% @chr4:136000001, elapsed 148.3s, est remaining 444.8s, peak mem 9362MB, user 4337.2s, sys 24.0s, output queue size 302
progress 30% @chr5:107000001, elapsed 168.4s, est remaining 392.9s, peak mem 9579MB, user 4976.6s, sys 26.6s, output queue size 464
progress 35% @chr6:81000001, elapsed 196.8s, est remaining 365.5s, peak mem 9727MB, user 5766.4s, sys 29.2s, output queue size 106
progress 40% @chr7:64000001, elapsed 227.5s, est remaining 341.2s, peak mem 10547MB, user 6563.3s, sys 32.4s, output queue size 197
progress 45% @chr6:32000001, elapsed 260.4s, est remaining 318.3s, peak mem 10757MB, user 7671.1s, sys 36.6s, output queue size 356
progress 50% @chr9:39000001, elapsed 286.8s, est remaining 286.8s, peak mem 11080MB, user 8460.0s, sys 39.3s, output queue size 187
progress 55% @chr10:109000001, elapsed 319.4s, est remaining 261.3s, peak mem 11178MB, user 9446.6s, sys 43.3s, output queue size 348
progress 60% @chr12:5000001, elapsed 353.6s, est remaining 235.7s, peak mem 11178MB, user 10394.1s, sys 46.8s, output queue size 510
progress 65% @chr13:18000001, elapsed 384.9s, est remaining 207.3s, peak mem 11330MB, user 11468.6s, sys 50.6s, output queue size 138
progress 70% @chr14:78000001, elapsed 405.4s, est remaining 173.7s, peak mem 11330MB, user 12116.0s, sys 53.1s, output queue size 299
progress 75% @chr16:42000001, elapsed 440.6s, est remaining 146.9s, peak mem 11330MB, user 13043.3s, sys 56.5s, output queue size 461
progress 80% @chr18:11000001, elapsed 490.0s, est remaining 122.5s, peak mem 11354MB, user 14372.8s, sys 60.8s, output queue size 623
progress 85% @chr19:45000001, elapsed 531.5s, est remaining 93.8s, peak mem 11393MB, user 15857.3s, sys 65.8s, output queue size 351
progress 90% @chrX:34000001, elapsed 559.9s, est remaining 62.2s, peak mem 11446MB, user 16689.8s, sys 68.8s, output queue size 513
progress 95% @chrY:55000001, elapsed 576.9s, est remaining 30.4s, peak mem 11533MB, user 17295.2s, sys 71.2s, output queue size 240
progress 100% @chr22:23000001, elapsed 607.0s, est remaining 0.0s, peak mem 11533MB, user 17773.1s, sys 73.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 74522276073
output file size: 112801232127
reads: 1535620780
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.010 user 0.002 sys 0.014 real
ReadQualCal::delayed_init: 1 calls 0.007 user 0.001 sys 0.023 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1737.771 user 24.826 sys 1810.324 real
done: 1 calls 0.463 user 0.501 sys 0.965 real
exec_no_coor: 1 calls 0.118 user 0.074 sys 0.209 real
execute: 1 calls 0.007 user 0.001 sys 608.588 real
fetch: 3219323 calls 107.180 user 0.544 sys 157.596 real
fetch_reads: 3219322 calls 346.182 user 1.201 sys 352.394 real
fetch_ref: 2130565 calls 6.753 user 1.141 sys 8.385 real
fetch_vcf: 2130565 calls 95.139 user 1.948 sys 99.444 real
idle: 32886 calls 7.841 user 0.236 sys 770.919 real
init: 1 calls 0.007 user 0.001 sys 0.030 real
update: 2495191 calls 3621.992 user 3.020 sys 3776.352 real
write: 3219323 calls 13212.286 user 35.976 sys 13382.160 real
overall: 12093345792 mem 17792.086 user 112.318 sys 611.202 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.035 user 0.001 sys 0.041 real
done: 1 calls 0.084 user 0.002 sys 0.081 real
idle: 61 calls 0.002 user 0.000 sys 31.407 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.102 user 0.030 sys 1.062 real