File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/dd736f9c9a20d0d8379df5f9928870/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 5.2s, est remaining 99.7s, peak mem 4047MB, user 116.7s, sys 3.5s, output queue size 146
progress 10% @chr2:94000001, elapsed 9.3s, est remaining 83.3s, peak mem 4985MB, user 250.3s, sys 6.1s, output queue size 117
progress 15% @chr3:17000001, elapsed 13.5s, est remaining 76.8s, peak mem 6793MB, user 371.4s, sys 7.3s, output queue size 203
progress 20% @chr3:155000001, elapsed 17.3s, est remaining 69.3s, peak mem 6897MB, user 492.3s, sys 9.0s, output queue size 283
progress 25% @chr4:87000001, elapsed 20.6s, est remaining 61.8s, peak mem 7132MB, user 600.8s, sys 9.9s, output queue size 302
progress 30% @chr5:83000001, elapsed 23.3s, est remaining 54.3s, peak mem 7286MB, user 683.9s, sys 10.4s, output queue size 464
progress 35% @chr6:70000001, elapsed 27.2s, est remaining 50.5s, peak mem 7464MB, user 784.2s, sys 11.2s, output queue size 625
progress 40% @chr7:64000001, elapsed 31.6s, est remaining 47.4s, peak mem 7772MB, user 911.5s, sys 12.1s, output queue size 786
progress 45% @chr8:78000001, elapsed 36.3s, est remaining 44.4s, peak mem 8229MB, user 1066.1s, sys 13.0s, output queue size 204
progress 50% @chr8:144000001, elapsed 40.6s, est remaining 40.6s, peak mem 8709MB, user 1176.5s, sys 13.6s, output queue size 366
progress 55% @chr10:101000001, elapsed 45.7s, est remaining 37.4s, peak mem 8963MB, user 1331.9s, sys 14.7s, output queue size 527
progress 60% @chr11:130000001, elapsed 50.4s, est remaining 33.6s, peak mem 8963MB, user 1496.8s, sys 15.8s, output queue size 510
progress 65% @chr12:123000001, elapsed 55.0s, est remaining 29.6s, peak mem 9024MB, user 1627.3s, sys 16.5s, output queue size 474
progress 70% @chr14:85000001, elapsed 57.9s, est remaining 24.8s, peak mem 9024MB, user 1718.3s, sys 17.0s, output queue size 635
progress 75% @chr16:41000001, elapsed 62.8s, est remaining 20.9s, peak mem 9024MB, user 1855.3s, sys 17.8s, output queue size 797
progress 80% @chr18:24000001, elapsed 70.3s, est remaining 17.6s, peak mem 9411MB, user 2063.0s, sys 19.0s, output queue size 623
progress 85% @chr20:25000001, elapsed 76.2s, est remaining 13.4s, peak mem 9411MB, user 2259.7s, sys 20.1s, output queue size 785
progress 90% @chrX:34000001, elapsed 80.5s, est remaining 8.9s, peak mem 9411MB, user 2397.8s, sys 20.8s, output queue size 947
progress 95% @chrY:54000001, elapsed 83.2s, est remaining 4.4s, peak mem 9411MB, user 2495.1s, sys 21.5s, output queue size 675
progress 100% @chr22:23000001, elapsed 90.0s, est remaining 0.0s, peak mem 9411MB, user 2610.2s, sys 22.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 72638040988
reads: 1429869427
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1283.861 user 20.028 sys 1305.599 real
done: 1 calls 0.045 user 0.019 sys 0.066 real
exec_no_coor: 1 calls 0.000 user 0.011 sys 0.031 real
execute: 1 calls 0.004 user 0.001 sys 89.983 real
idle: 214 calls 0.146 user 0.001 sys 185.838 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9868763136 mem 2611.345 user 22.368 sys 91.330 real