cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_85O-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_85O-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 5.9s, est remaining 112.9s, peak mem 4344MB, user 155.6s, sys 4.1s, output queue size 172
progress 10% @chr2:23693269, elapsed 13.3s, est remaining 119.6s, peak mem 5227MB, user 352.1s, sys 6.1s, output queue size 1149
progress 15% @chr2:189666133, elapsed 19.8s, est remaining 112.1s, peak mem 5538MB, user 525.8s, sys 8.1s, output queue size 292
progress 20% @chr3:98591012, elapsed 26.2s, est remaining 104.9s, peak mem 5769MB, user 699.2s, sys 9.6s, output queue size 416
progress 25% @chr4:88521888, elapsed 31.7s, est remaining 95.0s, peak mem 5872MB, user 841.9s, sys 10.6s, output queue size 97
progress 30% @chr5:146514854, elapsed 36.6s, est remaining 85.4s, peak mem 5872MB, user 971.5s, sys 11.6s, output queue size 197
progress 35% @chr6:131949949, elapsed 46.6s, est remaining 86.5s, peak mem 7072MB, user 1245.9s, sys 14.1s, output queue size 637
progress 40% @chr7:128841454, elapsed 53.2s, est remaining 79.8s, peak mem 7072MB, user 1418.6s, sys 15.2s, output queue size 543
progress 45% @chr9:744491, elapsed 59.9s, est remaining 73.2s, peak mem 7072MB, user 1603.5s, sys 16.4s, output queue size 18
progress 50% @chr10:34336199, elapsed 66.0s, est remaining 66.0s, peak mem 7073MB, user 1764.6s, sys 17.8s, output queue size 107
progress 55% @chr11:48975498, elapsed 71.3s, est remaining 58.3s, peak mem 7073MB, user 1903.3s, sys 18.7s, output queue size 22
progress 60% @chr12:25232559, elapsed 77.6s, est remaining 51.7s, peak mem 7073MB, user 2071.5s, sys 19.7s, output queue size 807
progress 65% @chr13:49488290, elapsed 83.3s, est remaining 44.9s, peak mem 7073MB, user 2229.7s, sys 20.9s, output queue size 572
progress 70% @chr15:43105942, elapsed 88.9s, est remaining 38.1s, peak mem 7073MB, user 2376.4s, sys 21.9s, output queue size 457
progress 75% @chr16:30969602, elapsed 95.1s, est remaining 31.7s, peak mem 7073MB, user 2547.7s, sys 23.0s, output queue size 32
progress 80% @chr17:42697554, elapsed 101.0s, est remaining 25.2s, peak mem 7073MB, user 2707.1s, sys 24.3s, output queue size 705
progress 85% @chr19:5719704, elapsed 106.5s, est remaining 18.8s, peak mem 7073MB, user 2857.2s, sys 25.2s, output queue size 404
progress 90% @chr19:55771805, elapsed 111.4s, est remaining 12.4s, peak mem 7073MB, user 2988.9s, sys 26.0s, output queue size 65
progress 95% @chr22:36312049, elapsed 116.9s, est remaining 6.2s, peak mem 7073MB, user 3134.9s, sys 27.1s, output queue size 24
progress 100% @chr6_GL000251v2_alt:3946951, elapsed 120.8s, est remaining 0.0s, peak mem 7073MB, user 3238.0s, sys 27.9s, output queue size 6
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 45044196667
reads: 870183887
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1607.286 user 21.741 sys 1688.051 real
done: 1 calls 0.437 user 0.337 sys 0.783 real
execute: 1 calls 0.011 user 0.000 sys 120.791 real
fetch_reads: 208647 calls 148.483 user 0.352 sys 156.525 real
fetch_ref: 206921 calls 0.686 user 0.761 sys 1.665 real
fetch_vcf: 206921 calls 76.798 user 1.969 sys 82.359 real
idle: 95 calls 0.044 user 0.000 sys 32.839 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 371786 calls 1670.512 user 2.010 sys 1716.230 real
overall: 7417274368 mem 3642.346 user 28.885 sys 122.415 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory