File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/3c175cb0ae2f4e466adc3e1a8d50f7/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 97255879
total bases: 14685637729
Q20 bases: 14255678133(97.0722%)
Q30 bases: 13464109469(91.6822%)
Q40 bases: 13464109469(91.6822%)

Read2 before filtering:
total reads: 97255879
total bases: 14685637729
Q20 bases: 13979488656(95.1916%)
Q30 bases: 12794586465(87.1231%)
Q40 bases: 12794586465(87.1231%)

Read1 after filtering:
total reads: 95491813
total bases: 13863053451
Q20 bases: 13529654336(97.5951%)
Q30 bases: 12829314015(92.5432%)
Q40 bases: 12829314015(92.5432%)

Read2 after filtering:
total reads: 95491813
total bases: 13864304613
Q20 bases: 13327229966(96.1262%)
Q30 bases: 12295356807(88.6835%)
Q40 bases: 12295356807(88.6835%)

Filtering result:
reads passed filter: 190983626
reads failed due to low quality: 3514154
reads failed due to too many N: 10256
reads failed due to too short: 3722
reads with adapter trimmed: 30765746
bases trimmed due to adapters: 1115513581

Duplication rate: 10.7899%

Insert size peak (evaluated by paired-end reads): 178

JSON report: 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L004_R1_001.fastq.gz --in2 1029_I9B-T1-TDNA-1_A23MHWWLT4_1_S27_L004_R2_001.fastq.gz --out1 1029_I9B-T1-TDNA-1_A23MHWWLT4_1/1029_I9B-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_I9B-T1-TDNA-1_A23MHWWLT4_1/1029_I9B-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 647 seconds