[2026-06-06T01:01:44.405274Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-06T01:01:44.409351Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-06T01:01:44.409366Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-06T01:01:44.409370Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-06T01:01:44.409374Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXvBf7Pd'
[2026-06-06T01:01:44.409378Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-06T01:01:44.409383Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-06T01:01:44.409386Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-06T01:01:44.409390Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-06T01:01:44.409393Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-06T01:01:44.409397Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-06T01:01:44.409400Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-06T01:01:44.409404Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-06T01:01:44.409408Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-06T01:01:44.410077Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-06T01:01:44.410163Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-06T01:01:44.415811Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-06T01:01:44.416470Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-06T01:01:44.416681Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-06T01:01:44.417078Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-06T01:01:44.417322Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.418307Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.418638Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.418819Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.418931Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.419206Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.419526Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.419926Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.420027Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.421464Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.422012Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.422347Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-06T01:01:44.422681Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.422910Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423198Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423268Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423382Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423448Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423557Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423621Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423807Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423876Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423988Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.424057Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.424306Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.424541Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.424664Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.424729Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.424838Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.424903Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425011Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425108Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425229Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425291Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425399Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425464Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425593Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425683Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.426208Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.426393Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.426554Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.426631Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.426754Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.426818Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.426935Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.427000Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.427116Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.427230Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.427345Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.427427Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.427682Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428096Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428223Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428288Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428398Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428468Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428584Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428650Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428760Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428823Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428934Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.428997Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.429155Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.429617Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.429731Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.429829Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.429939Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430000Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430111Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430176Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430287Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430352Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430457Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430519Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.431780Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.431995Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.432640Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.432712Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.432826Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.432894Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433037Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433103Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433221Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433283Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433392Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433460Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433603Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433725Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.434437Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.434508Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.434637Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.434709Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.434824Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.434887Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.434999Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.435063Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.435175Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.435235Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451147Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451602Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.451786Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452693Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.452889Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453113Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453203Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453444Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453787Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.453866Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454307Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454632Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.454927Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455250Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.455493Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-06T01:01:44.456394Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.457117Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.458313Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.459251Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.462922Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0003] Task initiated on local node
[2026-06-06T01:01:44.467460Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-06T01:01:44.469944Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0007] Task initiated on local node
[2026-06-06T01:01:44.470435Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-06T01:01:44.473605Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0007] Task initiated on local node
[2026-06-06T01:01:44.476453Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-06T01:01:44.479382Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-06T01:01:44.544051Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.544111Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.544470Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-06T01:01:44.545394Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.545696Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.546313Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.550046Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0007] Task initiated on local node
[2026-06-06T01:01:44.551076Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.551271Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0008] Task initiated on local node
[2026-06-06T01:01:44.553508Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0002] Task initiated on local node
[2026-06-06T01:01:45.617907Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.618925Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.621694Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0002] Task initiated on local node
[2026-06-06T01:02:01.236986Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.238415Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.241124Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-06T01:02:20.867294Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:20.868898Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:02:20.871907Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0007] Task initiated on local node
[2026-06-06T01:02:20.900919Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:20.901784Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:02:20.904702Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0002] Task initiated on local node
[2026-06-06T01:02:42.623559Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:42.625000Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:42.627922Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0001] Task initiated on local node
[2026-06-06T01:03:14.098556Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.100112Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.103289Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0000] Task initiated on local node
[2026-06-06T01:03:14.164370Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.165280Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.168016Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-06T01:03:14.229276Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.230159Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.232604Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-06T01:03:14.294185Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.295070Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.297616Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0006] Task initiated on local node
[2026-06-06T01:03:24.912389Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:24.913835Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:24.916761Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0000] Task initiated on local node
[2026-06-06T01:03:24.945770Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:24.946636Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:03:24.949140Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-06T01:03:24.978529Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:24.979346Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:03:24.981546Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-06T01:03:25.011350Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.012143Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.014871Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0000] Task initiated on local node
[2026-06-06T01:03:25.076165Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.076994Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.079729Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0000] Task initiated on local node
[2026-06-06T01:03:25.108872Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.109696Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.112684Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-06T01:03:25.173618Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.174423Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.177025Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0004] Task initiated on local node
[2026-06-06T01:03:25.789637Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.790843Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.793845Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-06T01:03:25.854920Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.856073Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.858928Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-06T01:03:25.920079Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.921183Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.923599Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-06T01:03:25.953022Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.954098Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.956765Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-06T01:03:40.381512Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.382920Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.385810Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0005] Task initiated on local node
[2026-06-06T01:03:42.451519Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.452543Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.455066Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0005] Task initiated on local node
[2026-06-06T01:03:42.484481Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.485292Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.488042Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0000] Task initiated on local node
[2026-06-06T01:03:42.549346Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.550112Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.552674Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0000] Task initiated on local node
[2026-06-06T01:03:42.582090Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.582881Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:42.585377Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0001] Task initiated on local node
[2026-06-06T01:03:46.655501Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:46.656428Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:03:46.659059Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0009] Task initiated on local node
[2026-06-06T01:03:57.323507Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:57.324704Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:03:57.327441Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0002] Task initiated on local node
[2026-06-06T01:03:57.389100Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:57.389951Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:57.392202Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0004] Task initiated on local node
[2026-06-06T01:03:57.421775Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:57.422583Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:57.424956Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0004] Task initiated on local node
[2026-06-06T01:04:15.596642Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:15.598206Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:04:15.601089Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0005] Task initiated on local node
[2026-06-06T01:04:18.068627Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.069478Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.072615Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-06T01:04:18.133814Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.134667Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.137346Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-06T01:04:18.166573Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.167400Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.170379Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-06T01:04:18.231323Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.232116Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.234812Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0002] Task initiated on local node
[2026-06-06T01:04:18.296071Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.296829Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.299472Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-06T01:04:18.328737Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.329474Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.331975Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0002] Task initiated on local node
[2026-06-06T01:04:18.393633Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.394358Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.397358Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-06T01:04:18.458331Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.459097Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:18.461717Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0006] Task initiated on local node
[2026-06-06T01:04:23.185470Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.186314Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.189251Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0006] Task initiated on local node
[2026-06-06T01:04:23.250619Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.251626Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.254424Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0007] Task initiated on local node
[2026-06-06T01:04:23.315713Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.316712Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.319404Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-06T01:04:23.348734Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.349718Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.352402Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0001] Task initiated on local node
[2026-06-06T01:04:23.381557Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.382521Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:23.385137Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0004] Task initiated on local node
[2026-06-06T01:04:24.248532Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:24.249380Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:04:24.252245Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0003] Task initiated on local node
[2026-06-06T01:04:29.225779Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.226561Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.229359Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0004] Task initiated on local node
[2026-06-06T01:04:29.290766Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.291513Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.294204Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-06T01:04:29.355812Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.356549Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.359564Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-06T01:04:29.420609Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.421283Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.423802Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0008] Task initiated on local node
[2026-06-06T01:04:30.137089Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:30.137923Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:04:30.140671Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0009] Task initiated on local node
[2026-06-06T01:04:30.201918Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:30.202614Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:04:30.205443Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-06T01:04:30.235069Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:30.235733Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:30.238334Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0006] Task initiated on local node
[2026-06-06T01:04:33.507813Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.508534Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.511273Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0003] Task initiated on local node
[2026-06-06T01:04:33.572644Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.573305Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.576051Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-06T01:04:33.605383Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.606035Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.608643Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-06T01:04:33.670041Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.670694Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.673570Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_011_chr12_0000] Task initiated on local node
[2026-06-06T01:04:33.735502Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.736159Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.738717Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-06T01:04:33.768059Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.768674Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.771434Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-06T01:04:33.833133Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.833763Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:04:33.836593Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-06T01:04:36.102993Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:36.103683Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:04:36.106560Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-06T01:04:36.167688Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:36.168350Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:04:36.170990Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-06T01:04:59.493012Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.494431Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.497553Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0008] Task initiated on local node
[2026-06-06T01:04:59.558559Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.559238Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.562007Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-06T01:04:59.591362Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.591966Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.594545Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_014_chr15_0001] Task initiated on local node
[2026-06-06T01:05:01.760803Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:01.761522Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:01.764176Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0003] Task initiated on local node
[2026-06-06T01:05:24.133769Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.135040Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.138201Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0005] Task initiated on local node
[2026-06-06T01:05:24.199261Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.199860Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.202250Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0004] Task initiated on local node
[2026-06-06T01:05:24.263824Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.264389Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.266853Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-06T01:05:24.296347Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.296958Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.299436Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-06T01:05:24.360919Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.361479Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.364037Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_013_chr14_0005] Task initiated on local node
[2026-06-06T01:05:46.082369Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.083544Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.086486Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0006] Task initiated on local node
[2026-06-06T01:05:46.147695Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.148302Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.150715Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0001] Task initiated on local node
[2026-06-06T01:05:46.180346Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.180867Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.183446Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-06T01:05:46.212816Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.213392Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.215916Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-06T01:05:46.277433Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.278013Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.280430Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-06T01:05:46.309885Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.310414Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.312942Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-06T01:05:46.342260Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.342793Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.345271Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0003] Task initiated on local node
[2026-06-06T01:05:46.406931Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.407437Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.409893Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0001] Task initiated on local node
[2026-06-06T01:05:46.471354Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.471871Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:05:46.474403Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_012_chr13_0008] Task initiated on local node
[2026-06-06T01:05:48.840839Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.841429Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.844443Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0006] Task initiated on local node
[2026-06-06T01:05:48.905464Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:13.482977Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:13.484137Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:06:13.486875Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0003] Task initiated on local node
[2026-06-06T01:06:13.548108Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:25.468030Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:25.469114Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:06:25.471848Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0005] Task initiated on local node
[2026-06-06T01:06:25.533116Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:05.012246Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:05.013485Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:07:05.016216Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_012_chr13_0008] Task initiated on local node
[2026-06-06T01:07:05.077547Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_012_chr13_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:08:25.090712Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:08:25.092297Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:08:25.095198Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-06T01:08:25.156560Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:08:26.173431Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:08:26.174040Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:08:26.176807Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-06T01:08:26.238214Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:29.517124Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:09:29.518351Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:09:29.520831Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_014_chr15_0007] Task initiated on local node
[2026-06-06T01:09:29.582373Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_014_chr15_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.761428Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.762168Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.765026Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_013_chr14_0008] Task initiated on local node
[2026-06-06T01:10:18.826471Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_013_chr14_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.826792Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.826941Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.827361Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.827563Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.831880Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-06T01:10:18.833342Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-06T01:10:18.834471Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-06T01:10:18.892625Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.892704Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.892739Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.892953Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.893290Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.895809Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-06T01:10:18.896272Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-06T01:10:18.957857Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.957922Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.958114Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:10:18.960547Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-06T01:10:18.990157Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:33.064559Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-06T01:10:47.984392Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-06T01:10:47.984392Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] 
[2026-06-06T01:10:47.984392Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-06T01:10:47.984452Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] 
[2026-06-06T01:10:47.984460Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-06T01:10:47.984466Z] [nf-1ee80ccba11f1c93e8b24098352e29b8-18692-2ssz5] [590_1] [WorkflowRunner] Elapsed time for full workflow: 543 sec