Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/4ce69216817699472f2fe59921ad74/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/4ce69216817699472f2fe59921ad74/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/foresight_clarity_targets_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/db10c5a483ab5aeea888c988e22091/1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/db10c5a483ab5aeea888c988e22091/1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_HTI-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 4.4s, est remaining 82.9s, peak mem 3195MB, user 98.2s, sys 3.2s, output queue size 150
progress 10% @chr2:90000001, elapsed 7.9s, est remaining 71.1s, peak mem 4301MB, user 214.6s, sys 5.4s, output queue size 68
progress 15% @chr2:238000001, elapsed 12.2s, est remaining 69.2s, peak mem 5808MB, user 347.5s, sys 8.0s, output queue size 122
progress 20% @chr3:174000001, elapsed 15.6s, est remaining 62.3s, peak mem 5808MB, user 445.8s, sys 9.0s, output queue size 283
progress 25% @chr4:136000001, elapsed 18.5s, est remaining 55.5s, peak mem 5808MB, user 543.4s, sys 10.0s, output queue size 302
progress 30% @chr5:107000001, elapsed 20.9s, est remaining 48.9s, peak mem 5812MB, user 608.9s, sys 10.6s, output queue size 464
progress 35% @chr6:70000001, elapsed 24.5s, est remaining 45.5s, peak mem 5976MB, user 704.9s, sys 11.6s, output queue size 625
progress 40% @chr7:64000001, elapsed 28.4s, est remaining 42.6s, peak mem 6092MB, user 831.4s, sys 12.9s, output queue size 194
progress 45% @chr8:74000001, elapsed 33.2s, est remaining 40.6s, peak mem 6457MB, user 973.2s, sys 14.1s, output queue size 204
progress 50% @chr9:81000001, elapsed 37.1s, est remaining 37.1s, peak mem 6858MB, user 1073.6s, sys 14.9s, output queue size 366
progress 55% @chr10:118000001, elapsed 41.7s, est remaining 34.1s, peak mem 7169MB, user 1225.1s, sys 16.3s, output queue size 348
progress 60% @chr11:130000001, elapsed 46.2s, est remaining 30.8s, peak mem 7169MB, user 1363.6s, sys 17.4s, output queue size 510
progress 65% @chr12:56000001, elapsed 50.5s, est remaining 27.2s, peak mem 7169MB, user 1476.2s, sys 18.3s, output queue size 672
progress 70% @chr14:35000001, elapsed 53.3s, est remaining 22.8s, peak mem 7169MB, user 1602.4s, sys 19.3s, output queue size 299
progress 75% @chr16:38000001, elapsed 58.3s, est remaining 19.4s, peak mem 7169MB, user 1733.8s, sys 20.2s, output queue size 461
progress 80% @chr18:9000001, elapsed 64.8s, est remaining 16.2s, peak mem 7212MB, user 1915.3s, sys 21.4s, output queue size 623
progress 85% @chr19:40000001, elapsed 70.8s, est remaining 12.5s, peak mem 7212MB, user 2128.7s, sys 22.6s, output queue size 351
progress 90% @chrX:34000001, elapsed 75.4s, est remaining 8.4s, peak mem 7329MB, user 2263.6s, sys 23.7s, output queue size 513
progress 95% @chrY:53000001, elapsed 78.8s, est remaining 4.1s, peak mem 7393MB, user 2349.6s, sys 24.6s, output queue size 675
progress 100% @chr15:88000001, elapsed 87.3s, est remaining 0.0s, peak mem 7393MB, user 2482.3s, sys 25.5s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74334244054
reads: 1460016157
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1173.387 user 22.379 sys 1194.676 real
done: 1 calls 0.008 user 0.000 sys 0.010 real
exec_no_coor: 1 calls 0.018 user 0.018 sys 0.055 real
execute: 1 calls 0.002 user 0.001 sys 87.360 real
idle: 265 calls 0.141 user 0.001 sys 229.265 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7752151040 mem 2483.227 user 25.748 sys 88.651 real