File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e55bf1d13d96673112f5e0b3235ecf/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 2.5s, est remaining 47.5s, peak mem 1933MB, user 57.2s, sys 1.7s, output queue size 146
progress 10% @chr2:90000001, elapsed 4.3s, est remaining 39.1s, peak mem 2371MB, user 118.7s, sys 2.8s, output queue size 117
progress 15% @chr2:197000001, elapsed 6.4s, est remaining 36.4s, peak mem 2922MB, user 183.4s, sys 4.9s, output queue size 122
progress 20% @chr3:136000001, elapsed 8.3s, est remaining 33.2s, peak mem 2955MB, user 238.5s, sys 5.7s, output queue size 141
progress 25% @chr4:132000001, elapsed 9.9s, est remaining 29.6s, peak mem 2955MB, user 288.2s, sys 6.5s, output queue size 302
progress 30% @chr5:104000001, elapsed 11.2s, est remaining 26.1s, peak mem 3111MB, user 326.1s, sys 7.1s, output queue size 464
progress 35% @chr6:78000001, elapsed 13.0s, est remaining 24.2s, peak mem 3177MB, user 380.8s, sys 7.9s, output queue size 106
progress 40% @chr7:63000001, elapsed 14.9s, est remaining 22.4s, peak mem 3356MB, user 436.8s, sys 8.4s, output queue size 195
progress 45% @chr8:58000001, elapsed 17.0s, est remaining 20.8s, peak mem 3406MB, user 499.0s, sys 9.2s, output queue size 204
progress 50% @chr9:81000001, elapsed 18.8s, est remaining 18.8s, peak mem 3570MB, user 547.0s, sys 9.6s, output queue size 366
progress 55% @chr10:118000001, elapsed 21.0s, est remaining 17.2s, peak mem 3693MB, user 616.4s, sys 10.3s, output queue size 348
progress 60% @chr11:130000001, elapsed 23.2s, est remaining 15.4s, peak mem 3693MB, user 683.9s, sys 10.9s, output queue size 510
progress 65% @chr13:31000001, elapsed 25.2s, est remaining 13.6s, peak mem 3780MB, user 753.6s, sys 11.6s, output queue size 138
progress 70% @chr14:35000001, elapsed 26.5s, est remaining 11.3s, peak mem 3780MB, user 793.5s, sys 12.0s, output queue size 299
progress 75% @chr16:42000001, elapsed 28.8s, est remaining 9.6s, peak mem 3780MB, user 854.2s, sys 12.5s, output queue size 461
progress 80% @chr18:1, elapsed 32.2s, est remaining 8.1s, peak mem 3789MB, user 946.2s, sys 13.2s, output queue size 623
progress 85% @chr19:47000001, elapsed 35.1s, est remaining 6.2s, peak mem 3789MB, user 1050.0s, sys 14.0s, output queue size 351
progress 90% @chrX:30000001, elapsed 36.9s, est remaining 4.1s, peak mem 3789MB, user 1109.1s, sys 14.5s, output queue size 513
progress 95% @chrY:54000001, elapsed 38.2s, est remaining 2.0s, peak mem 3806MB, user 1142.7s, sys 14.9s, output queue size 675
progress 100% @chr22:23000001, elapsed 41.8s, est remaining 0.0s, peak mem 3806MB, user 1189.4s, sys 15.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 40063100595
reads: 753549713
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 618.925 user 13.013 sys 634.067 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.006 user 0.000 sys 0.009 real
execute: 1 calls 0.006 user 0.002 sys 41.814 real
idle: 158 calls 0.128 user 0.001 sys 120.966 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 3991035904 mem 1190.296 user 15.605 sys 43.087 real