Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c9222856c0e5d4ad5c6e552cc67434/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/1fcf1d5d4cdf7b51d80120094af5c4/1136_00H-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/1fcf1d5d4cdf7b51d80120094af5c4/1136_00H-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/c9222856c0e5d4ad5c6e552cc67434/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/foresight_clarity_targets_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_00H-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_00H-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:173000001, elapsed 5.0s, est remaining 94.5s, peak mem 4015MB, user 111.7s, sys 2.8s, output queue size 150
progress 10% @chr1:119000001, elapsed 8.8s, est remaining 78.9s, peak mem 5245MB, user 238.1s, sys 5.1s, output queue size 203
progress 15% @chr3:18000001, elapsed 12.8s, est remaining 72.5s, peak mem 7499MB, user 353.0s, sys 6.8s, output queue size 203
progress 20% @chr3:175000001, elapsed 16.3s, est remaining 65.1s, peak mem 9193MB, user 452.0s, sys 7.8s, output queue size 364
progress 25% @chr4:124000001, elapsed 19.3s, est remaining 58.0s, peak mem 9717MB, user 549.8s, sys 8.7s, output queue size 525
progress 30% @chr5:107000001, elapsed 21.7s, est remaining 50.6s, peak mem 9938MB, user 625.6s, sys 11.4s, output queue size 464
progress 35% @chr6:91000001, elapsed 25.1s, est remaining 46.7s, peak mem 9938MB, user 724.4s, sys 12.5s, output queue size 625
progress 40% @chr7:66000001, elapsed 29.1s, est remaining 43.7s, peak mem 10252MB, user 823.6s, sys 13.3s, output queue size 786
progress 45% @chr8:78000001, elapsed 33.4s, est remaining 40.8s, peak mem 10490MB, user 980.3s, sys 14.7s, output queue size 204
progress 50% @chr9:102000001, elapsed 36.9s, est remaining 36.9s, peak mem 10621MB, user 1068.8s, sys 15.3s, output queue size 366
progress 55% @chr10:118000001, elapsed 41.2s, est remaining 33.7s, peak mem 10971MB, user 1213.0s, sys 16.4s, output queue size 348
progress 60% @chr11:134000001, elapsed 45.5s, est remaining 30.3s, peak mem 10971MB, user 1342.6s, sys 17.2s, output queue size 510
progress 65% @chr13:35000001, elapsed 49.7s, est remaining 26.8s, peak mem 10971MB, user 1447.6s, sys 18.1s, output queue size 672
progress 70% @chr14:71000001, elapsed 52.3s, est remaining 22.4s, peak mem 10971MB, user 1526.9s, sys 18.7s, output queue size 833
progress 75% @chr16:42000001, elapsed 57.1s, est remaining 19.0s, peak mem 10971MB, user 1697.5s, sys 19.8s, output queue size 461
progress 80% @chr18:25000001, elapsed 64.2s, est remaining 16.1s, peak mem 11262MB, user 1893.0s, sys 20.9s, output queue size 623
progress 85% @chr20:48000001, elapsed 70.6s, est remaining 12.5s, peak mem 11262MB, user 2090.9s, sys 22.2s, output queue size 785
progress 90% @chrX:34000001, elapsed 74.2s, est remaining 8.2s, peak mem 11262MB, user 2227.7s, sys 23.2s, output queue size 513
progress 95% @chrY:54000001, elapsed 76.4s, est remaining 4.0s, peak mem 11275MB, user 2279.3s, sys 23.5s, output queue size 675
progress 100% @chr22:23000001, elapsed 84.7s, est remaining 0.0s, peak mem 11317MB, user 2400.3s, sys 24.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74522953788
reads: 1364658919
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1267.403 user 22.186 sys 1288.179 real
done: 1 calls 0.000 user 0.000 sys 0.008 real
exec_no_coor: 1 calls 0.004 user 0.004 sys 0.016 real
execute: 1 calls 0.005 user 0.003 sys 84.693 real
idle: 265 calls 0.159 user 0.001 sys 230.237 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 11867045888 mem 2401.185 user 24.618 sys 86.074 real