cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo AlignmentStat 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.sentieon.insert_size_metrics --algo QualDistribution 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:109000001, elapsed 11.9s, est remaining 227.0s, peak mem 3449MB, user 282.1s, sys 3.9s, output queue size 146
progress 10% @chr1:205000001, elapsed 22.0s, est remaining 198.4s, peak mem 5047MB, user 604.7s, sys 5.9s, output queue size 117
progress 15% @chr3:4000001, elapsed 34.4s, est remaining 194.7s, peak mem 5795MB, user 974.1s, sys 8.0s, output queue size 161
progress 20% @chr3:160000001, elapsed 43.7s, est remaining 174.7s, peak mem 5802MB, user 1249.0s, sys 9.1s, output queue size 283
progress 25% @chr4:135000001, elapsed 52.0s, est remaining 156.1s, peak mem 5896MB, user 1518.4s, sys 10.2s, output queue size 444
progress 30% @chr5:100000001, elapsed 58.7s, est remaining 137.0s, peak mem 6091MB, user 1714.9s, sys 10.8s, output queue size 464
progress 35% @chr6:70000001, elapsed 68.7s, est remaining 127.7s, peak mem 6180MB, user 1999.6s, sys 11.8s, output queue size 625
progress 40% @chr6:117000001, elapsed 79.9s, est remaining 119.8s, peak mem 6354MB, user 2380.1s, sys 12.9s, output queue size 194
progress 45% @chr8:74000001, elapsed 93.5s, est remaining 114.3s, peak mem 6779MB, user 2768.7s, sys 13.9s, output queue size 204
progress 50% @chr9:33000001, elapsed 104.9s, est remaining 104.9s, peak mem 7093MB, user 3071.5s, sys 14.9s, output queue size 366
progress 55% @chr10:73000001, elapsed 118.6s, est remaining 97.0s, peak mem 7287MB, user 3428.7s, sys 16.2s, output queue size 527
progress 60% @chr11:134000001, elapsed 132.1s, est remaining 88.1s, peak mem 7288MB, user 3885.9s, sys 17.4s, output queue size 510
progress 65% @chr13:26000001, elapsed 145.5s, est remaining 78.3s, peak mem 7407MB, user 4260.1s, sys 18.4s, output queue size 672
progress 70% @chr13:113000001, elapsed 153.7s, est remaining 65.9s, peak mem 7471MB, user 4538.6s, sys 19.3s, output queue size 833
progress 75% @chr16:42000001, elapsed 168.6s, est remaining 56.2s, peak mem 7505MB, user 5049.0s, sys 20.7s, output queue size 461
progress 80% @chr18:25000001, elapsed 189.3s, est remaining 47.3s, peak mem 7649MB, user 5616.1s, sys 21.8s, output queue size 623
progress 85% @chr19:45000001, elapsed 208.8s, est remaining 36.9s, peak mem 7649MB, user 6211.5s, sys 23.2s, output queue size 785
progress 90% @chrX:34000001, elapsed 223.2s, est remaining 24.8s, peak mem 7685MB, user 6720.7s, sys 24.5s, output queue size 513
progress 95% @chrY:55000001, elapsed 233.0s, est remaining 12.3s, peak mem 7811MB, user 6974.3s, sys 25.3s, output queue size 675
progress 100% @chr22:23000001, elapsed 258.8s, est remaining 0.0s, peak mem 7811MB, user 7383.4s, sys 26.2s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 74334244054
reads: 1460016157
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1206.487 user 21.935 sys 1229.245 real
done: 1 calls 0.053 user 0.008 sys 0.069 real
exec_no_coor: 1 calls 0.034 user 0.011 sys 0.059 real
execute: 1 calls 0.003 user 0.001 sys 258.987 real
idle: 683 calls 0.173 user 0.000 sys 650.195 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8191377408 mem 7385.727 user 26.618 sys 260.368 real