File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/1bedee5fb47afdea1e5705deaaf1b4/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 82084615
total bases: 12394776865
Q20 bases: 12076029713(97.4284%)
Q30 bases: 11472080201(92.5558%)
Q40 bases: 11472080201(92.5558%)

Read2 before filtering:
total reads: 82084615
total bases: 12394776865
Q20 bases: 11763583832(94.9076%)
Q30 bases: 10728130029(86.5536%)
Q40 bases: 10728130029(86.5536%)

Read1 after filtering:
total reads: 80325450
total bases: 11773675371
Q20 bases: 11526721693(97.9025%)
Q30 bases: 10996116925(93.3958%)
Q40 bases: 10996116925(93.3958%)

Read2 after filtering:
total reads: 80325450
total bases: 11774556573
Q20 bases: 11296274021(95.938%)
Q30 bases: 10388233327(88.2261%)
Q40 bases: 10388233327(88.2261%)

Filtering result:
reads passed filter: 160650900
reads failed due to low quality: 3496252
reads failed due to too many N: 19594
reads failed due to too short: 2484
reads with adapter trimmed: 19562165
bases trimmed due to adapters: 713040612

Duplication rate: 12.8121%

Insert size peak (evaluated by paired-end reads): 271

JSON report: 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L002_R1_001.fastq.gz --in2 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L002_R2_001.fastq.gz --out1 1029_FZX-T1-TDNA-1_A23MHWWLT4_1/1029_FZX-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_FZX-T1-TDNA-1_A23MHWWLT4_1/1029_FZX-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 858 seconds