File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/b04bfb955fd3244eb9a87cbc2dbc18/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_7GC-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 6.1s, est remaining 116.8s, peak mem 3687MB, user 142.4s, sys 5.4s, output queue size 146
progress 10% @chr2:46000001, elapsed 10.8s, est remaining 97.0s, peak mem 4853MB, user 293.0s, sys 7.4s, output queue size 117
progress 15% @chr2:197000001, elapsed 15.9s, est remaining 90.0s, peak mem 6374MB, user 449.0s, sys 9.9s, output queue size 122
progress 20% @chr3:72000001, elapsed 20.4s, est remaining 81.4s, peak mem 6536MB, user 591.2s, sys 11.2s, output queue size 141
progress 25% @chr4:124000001, elapsed 24.3s, est remaining 72.8s, peak mem 6635MB, user 710.3s, sys 11.9s, output queue size 302
progress 30% @chr5:100000001, elapsed 27.4s, est remaining 63.9s, peak mem 6635MB, user 795.0s, sys 12.7s, output queue size 464
progress 35% @chr6:86000001, elapsed 32.1s, est remaining 59.6s, peak mem 7114MB, user 922.0s, sys 13.7s, output queue size 625
progress 40% @chr6:33000001, elapsed 37.3s, est remaining 56.0s, peak mem 8036MB, user 1095.2s, sys 14.9s, output queue size 195
progress 45% @chr8:82000001, elapsed 42.8s, est remaining 52.4s, peak mem 8139MB, user 1261.4s, sys 16.3s, output queue size 204
progress 50% @chr9:102000001, elapsed 47.5s, est remaining 47.5s, peak mem 8440MB, user 1377.2s, sys 17.0s, output queue size 366
progress 55% @chr10:99000001, elapsed 53.0s, est remaining 43.4s, peak mem 8685MB, user 1563.3s, sys 18.2s, output queue size 348
progress 60% @chr12:1000001, elapsed 58.8s, est remaining 39.2s, peak mem 8685MB, user 1740.8s, sys 19.5s, output queue size 510
progress 65% @chr12:56000001, elapsed 64.5s, est remaining 34.7s, peak mem 8776MB, user 1901.7s, sys 20.6s, output queue size 672
progress 70% @chr14:72000001, elapsed 68.0s, est remaining 29.2s, peak mem 8776MB, user 2015.6s, sys 21.3s, output queue size 833
progress 75% @chr16:42000001, elapsed 74.1s, est remaining 24.7s, peak mem 8776MB, user 2205.7s, sys 22.5s, output queue size 461
progress 80% @chr18:9000001, elapsed 83.0s, est remaining 20.7s, peak mem 8776MB, user 2446.2s, sys 23.9s, output queue size 623
progress 85% @chr19:15000001, elapsed 90.7s, est remaining 16.0s, peak mem 8822MB, user 2701.3s, sys 25.2s, output queue size 785
progress 90% @chr22:42000001, elapsed 95.5s, est remaining 10.6s, peak mem 8956MB, user 2877.3s, sys 26.2s, output queue size 513
progress 95% @chrY:55000001, elapsed 98.3s, est remaining 5.2s, peak mem 9190MB, user 2956.3s, sys 26.7s, output queue size 675
progress 100% @chr22:23000001, elapsed 107.2s, est remaining 0.0s, peak mem 9190MB, user 3070.5s, sys 27.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74522276073
reads: 1535620780
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1206.220 user 23.728 sys 1235.533 real
done: 1 calls 0.276 user 0.059 sys 0.342 real
exec_no_coor: 1 calls 0.000 user 0.031 sys 0.049 real
execute: 1 calls 0.003 user 0.002 sys 107.221 real
idle: 302 calls 0.149 user 0.001 sys 264.451 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9636724736 mem 3072.427 user 27.887 sys 109.230 real