File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/5f81ee1d5d98c64dfb42788ef5d7f9/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3LU-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.5s, est remaining 85.5s, peak mem 4081MB, user 101.8s, sys 4.0s, output queue size 146
progress 10% @chr2:58000001, elapsed 8.8s, est remaining 78.8s, peak mem 5741MB, user 230.0s, sys 6.7s, output queue size 117
progress 15% @chr2:224000001, elapsed 12.8s, est remaining 72.3s, peak mem 8446MB, user 344.9s, sys 8.2s, output queue size 210
progress 20% @chr3:175000001, elapsed 15.9s, est remaining 63.7s, peak mem 9987MB, user 440.8s, sys 9.1s, output queue size 364
progress 25% @chr4:124000001, elapsed 19.1s, est remaining 57.2s, peak mem 10473MB, user 541.5s, sys 10.2s, output queue size 525
progress 30% @chr5:102000001, elapsed 21.3s, est remaining 49.7s, peak mem 10632MB, user 611.5s, sys 12.9s, output queue size 464
progress 35% @chr6:91000001, elapsed 24.3s, est remaining 45.2s, peak mem 10772MB, user 703.6s, sys 13.8s, output queue size 625
progress 40% @chr7:79000001, elapsed 28.4s, est remaining 42.6s, peak mem 11142MB, user 797.7s, sys 14.7s, output queue size 786
progress 45% @chr8:74000001, elapsed 32.4s, est remaining 39.7s, peak mem 11401MB, user 940.6s, sys 16.0s, output queue size 204
progress 50% @chr7:140000001, elapsed 35.9s, est remaining 35.9s, peak mem 11946MB, user 1046.2s, sys 17.0s, output queue size 366
progress 55% @chr10:104000001, elapsed 40.0s, est remaining 32.7s, peak mem 12247MB, user 1149.4s, sys 18.2s, output queue size 527
progress 60% @chr11:69000001, elapsed 44.0s, est remaining 29.3s, peak mem 12247MB, user 1271.9s, sys 19.2s, output queue size 689
progress 65% @chr13:39000001, elapsed 48.0s, est remaining 25.9s, peak mem 12525MB, user 1389.9s, sys 20.0s, output queue size 672
progress 70% @chr14:76000001, elapsed 50.5s, est remaining 21.6s, peak mem 12567MB, user 1454.2s, sys 20.6s, output queue size 833
progress 75% @chr16:41000001, elapsed 55.5s, est remaining 18.5s, peak mem 12763MB, user 1618.3s, sys 22.1s, output queue size 989
progress 80% @chr18:29000001, elapsed 62.3s, est remaining 15.6s, peak mem 12835MB, user 1798.5s, sys 23.5s, output queue size 1151
progress 85% @chr18:47000001, elapsed 68.1s, est remaining 12.0s, peak mem 12835MB, user 1991.6s, sys 24.6s, output queue size 1313
progress 90% @chrX:42000001, elapsed 72.1s, est remaining 8.0s, peak mem 12998MB, user 2114.8s, sys 25.5s, output queue size 1475
progress 95% @chrY:54000001, elapsed 74.2s, est remaining 3.9s, peak mem 13273MB, user 2166.6s, sys 25.7s, output queue size 1637
progress 100% @chr8:38000001, elapsed 89.1s, est remaining 0.0s, peak mem 13418MB, user 2352.9s, sys 27.8s, output queue size 5061
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 77410294291
reads: 1436635500
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1169.132 user 24.358 sys 1197.572 real
done: 1 calls 0.010 user 0.010 sys 0.024 real
exec_no_coor: 1 calls 0.000 user 0.015 sys 0.032 real
execute: 1 calls 0.003 user 0.001 sys 89.118 real
idle: 438 calls 0.178 user 0.002 sys 410.619 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 14070284288 mem 2353.846 user 28.096 sys 90.488 real