cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cVw-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=659_cVw-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_cVw-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 659_cVw-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:153000001, elapsed 39.1s, est remaining 743.0s, peak mem 7095MB, user 982.7s, sys 11.0s, output queue size 44
progress 10% @chr2:80000001, elapsed 72.0s, est remaining 648.0s, peak mem 11017MB, user 2018.2s, sys 16.5s, output queue size 56
progress 15% @chr3:17000001, elapsed 114.9s, est remaining 651.4s, peak mem 12360MB, user 3166.9s, sys 21.6s, output queue size 203
progress 20% @chr3:176000001, elapsed 144.2s, est remaining 576.7s, peak mem 12495MB, user 4144.8s, sys 27.5s, output queue size 174
progress 25% @chr4:135000001, elapsed 172.3s, est remaining 516.8s, peak mem 12512MB, user 5022.5s, sys 31.0s, output queue size 302
progress 30% @chr5:107000001, elapsed 194.3s, est remaining 453.4s, peak mem 12598MB, user 5712.9s, sys 33.8s, output queue size 464
progress 35% @chr6:91000001, elapsed 224.6s, est remaining 417.1s, peak mem 12724MB, user 6509.5s, sys 36.8s, output queue size 625
progress 40% @chr7:65000001, elapsed 259.9s, est remaining 389.9s, peak mem 13220MB, user 7441.8s, sys 40.5s, output queue size 786
progress 45% @chr8:82000001, elapsed 299.4s, est remaining 365.9s, peak mem 13291MB, user 8833.2s, sys 45.3s, output queue size 204
progress 50% @chr9:76000001, elapsed 331.5s, est remaining 331.5s, peak mem 13681MB, user 9684.9s, sys 48.6s, output queue size 366
progress 55% @chr10:101000001, elapsed 370.7s, est remaining 303.3s, peak mem 13777MB, user 10826.9s, sys 53.0s, output queue size 527
progress 60% @chr12:1000001, elapsed 408.2s, est remaining 272.2s, peak mem 13777MB, user 12040.6s, sys 57.0s, output queue size 510
progress 65% @chr12:111000001, elapsed 448.0s, est remaining 241.2s, peak mem 13785MB, user 13107.5s, sys 60.8s, output queue size 672
progress 70% @chr14:84000001, elapsed 472.3s, est remaining 202.4s, peak mem 13815MB, user 13952.9s, sys 63.6s, output queue size 833
progress 75% @chr16:42000001, elapsed 513.6s, est remaining 171.2s, peak mem 13976MB, user 15214.8s, sys 67.6s, output queue size 461
progress 80% @chr17:7000001, elapsed 568.4s, est remaining 142.1s, peak mem 13976MB, user 16712.2s, sys 72.3s, output queue size 623
progress 85% @chr20:20000001, elapsed 617.8s, est remaining 109.0s, peak mem 13976MB, user 18457.8s, sys 78.0s, output queue size 351
progress 90% @chrX:32000001, elapsed 650.2s, est remaining 72.2s, peak mem 14397MB, user 19436.5s, sys 81.1s, output queue size 513
progress 95% @chrY:54000001, elapsed 669.1s, est remaining 35.2s, peak mem 14397MB, user 19908.2s, sys 83.0s, output queue size 675
progress 100% @chr22:23000001, elapsed 701.5s, est remaining 0.0s, peak mem 14449MB, user 20728.7s, sys 85.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 79716908892
output file size: 122561783756
reads: 1583694629
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.015 real
ReadQualCal::delayed_init: 1 calls 0.005 user 0.000 sys 0.026 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1779.347 user 26.113 sys 1843.356 real
done: 1 calls 0.490 user 0.343 sys 0.842 real
exec_no_coor: 1 calls 0.007 user 0.008 sys 0.023 real
execute: 1 calls 0.007 user 0.000 sys 702.581 real
fetch: 3219323 calls 108.225 user 0.498 sys 146.834 real
fetch_reads: 3219322 calls 357.483 user 1.410 sys 366.042 real
fetch_ref: 2061408 calls 8.183 user 1.449 sys 9.225 real
fetch_vcf: 2061408 calls 98.667 user 1.630 sys 104.051 real
idle: 45839 calls 20.972 user 0.232 sys 698.557 real
init: 1 calls 0.005 user 0.000 sys 0.032 real
update: 2474975 calls 4195.006 user 4.664 sys 4353.738 real
write: 3219323 calls 16006.919 user 45.092 sys 16200.652 real
overall: 15151915008 mem 20767.157 user 121.818 sys 705.075 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 659_cVw-T1-TDNA-1_A23MHWWLT4_1.table --after 659_cVw-T1-TDNA-1_A23MHWWLT4_1.table.post 659_cVw-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.030 user 0.000 sys 0.043 real
done: 1 calls 0.079 user 0.001 sys 0.082 real
idle: 60 calls 0.002 user 0.000 sys 31.293 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86794240 mem 0.093 user 0.041 sys 1.054 real