Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/efc608aacd7212f72b7db77646fadd/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/FINAL_hotspot_list_07302025_hg38_sorted.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/87f5f2c5f87d806b00a0a853358d4c/1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/efc608aacd7212f72b7db77646fadd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/87f5f2c5f87d806b00a0a853358d4c/1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_7GC-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 4.9s, est remaining 93.9s, peak mem 3984MB, user 112.1s, sys 3.7s, output queue size 146
progress 10% @chr1:226000001, elapsed 9.0s, est remaining 80.7s, peak mem 4578MB, user 242.7s, sys 6.3s, output queue size 117
progress 15% @chr2:237000001, elapsed 13.5s, est remaining 76.5s, peak mem 6461MB, user 376.7s, sys 12.1s, output queue size 122
progress 20% @chr3:176000001, elapsed 17.3s, est remaining 69.1s, peak mem 6629MB, user 495.9s, sys 13.9s, output queue size 141
progress 25% @chr4:135000001, elapsed 20.5s, est remaining 61.6s, peak mem 6629MB, user 594.3s, sys 15.3s, output queue size 302
progress 30% @chr5:94000001, elapsed 23.1s, est remaining 54.0s, peak mem 6650MB, user 667.2s, sys 16.2s, output queue size 464
progress 35% @chr6:91000001, elapsed 27.0s, est remaining 50.1s, peak mem 6993MB, user 772.2s, sys 17.5s, output queue size 625
progress 40% @chr7:65000001, elapsed 31.4s, est remaining 47.2s, peak mem 7632MB, user 903.4s, sys 18.7s, output queue size 197
progress 45% @chr8:75000001, elapsed 36.0s, est remaining 44.0s, peak mem 7723MB, user 1053.3s, sys 20.6s, output queue size 204
progress 50% @chr9:42000001, elapsed 39.8s, est remaining 39.8s, peak mem 7849MB, user 1155.2s, sys 21.7s, output queue size 366
progress 55% @chr10:103000001, elapsed 44.3s, est remaining 36.2s, peak mem 8211MB, user 1299.7s, sys 22.8s, output queue size 348
progress 60% @chr12:1000001, elapsed 48.6s, est remaining 32.4s, peak mem 8217MB, user 1436.3s, sys 24.1s, output queue size 510
progress 65% @chr12:123000001, elapsed 53.2s, est remaining 28.6s, peak mem 8382MB, user 1560.5s, sys 25.0s, output queue size 672
progress 70% @chr14:79000001, elapsed 56.0s, est remaining 24.0s, peak mem 8382MB, user 1638.1s, sys 25.6s, output queue size 833
progress 75% @chr16:42000001, elapsed 60.9s, est remaining 20.3s, peak mem 8382MB, user 1806.6s, sys 26.9s, output queue size 461
progress 80% @chr17:68000001, elapsed 67.7s, est remaining 16.9s, peak mem 8436MB, user 1994.9s, sys 28.2s, output queue size 623
progress 85% @chr19:47000001, elapsed 73.7s, est remaining 13.0s, peak mem 8502MB, user 2186.2s, sys 29.5s, output queue size 785
progress 90% @chrX:34000001, elapsed 77.5s, est remaining 8.6s, peak mem 8666MB, user 2326.6s, sys 30.6s, output queue size 513
progress 95% @chrY:55000001, elapsed 79.9s, est remaining 4.2s, peak mem 8666MB, user 2391.4s, sys 31.2s, output queue size 675
progress 100% @chr22:23000001, elapsed 88.1s, est remaining 0.0s, peak mem 8666MB, user 2489.8s, sys 31.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74522276073
reads: 1535620780
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1187.043 user 28.348 sys 1214.296 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.011 user 0.033 sys 0.066 real
execute: 1 calls 0.001 user 0.000 sys 88.152 real
idle: 273 calls 0.144 user 0.001 sys 239.820 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9087246336 mem 2491.000 user 32.245 sys 89.553 real