File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/ab1c25d00a1de6703ff9fb70b486b6/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 82866845
total bases: 12512893595
Q20 bases: 12176830914(97.3143%)
Q30 bases: 11542757952(92.2469%)
Q40 bases: 11542757952(92.2469%)

Read2 before filtering:
total reads: 82866845
total bases: 12512893595
Q20 bases: 11847472257(94.6821%)
Q30 bases: 10752207372(85.929%)
Q40 bases: 10752207372(85.929%)

Read1 after filtering:
total reads: 81117922
total bases: 11906534961
Q20 bases: 11642182071(97.7798%)
Q30 bases: 11081480826(93.0706%)
Q40 bases: 11081480826(93.0706%)

Read2 after filtering:
total reads: 81117922
total bases: 11907358616
Q20 bases: 11392501925(95.6761%)
Q30 bases: 10423828576(87.5411%)
Q40 bases: 10423828576(87.5411%)

Filtering result:
reads passed filter: 162235844
reads failed due to low quality: 3479160
reads failed due to too many N: 16192
reads failed due to too short: 2494
reads with adapter trimmed: 18838142
bases trimmed due to adapters: 686504867

Duplication rate: 13.8562%

Insert size peak (evaluated by paired-end reads): 267

JSON report: 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L008_R1_001.fastq.gz --in2 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L008_R2_001.fastq.gz --out1 1029_FZX-T1-TDNA-1_A23MHWWLT4_1/1029_FZX-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_FZX-T1-TDNA-1_A23MHWWLT4_1/1029_FZX-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 964 seconds