File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/8578aadb68f1b342742e43c744d0d7/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_6G2-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_6G2-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:154000001, elapsed 3.9s, est remaining 74.2s, peak mem 2938MB, user 84.1s, sys 2.3s, output queue size 150
progress 10% @chr2:58000001, elapsed 6.5s, est remaining 58.9s, peak mem 3698MB, user 177.6s, sys 4.4s, output queue size 166
progress 15% @chr2:177000001, elapsed 9.5s, est remaining 54.0s, peak mem 4858MB, user 267.2s, sys 5.9s, output queue size 210
progress 20% @chr3:158000001, elapsed 12.1s, est remaining 48.5s, peak mem 4980MB, user 347.5s, sys 6.7s, output queue size 283
progress 25% @chr4:134000001, elapsed 14.3s, est remaining 43.0s, peak mem 5059MB, user 411.4s, sys 7.2s, output queue size 302
progress 30% @chr5:106000001, elapsed 15.9s, est remaining 37.2s, peak mem 5194MB, user 461.3s, sys 7.5s, output queue size 464
progress 35% @chr6:91000001, elapsed 18.6s, est remaining 34.6s, peak mem 5504MB, user 532.2s, sys 8.1s, output queue size 625
progress 40% @chr7:65000001, elapsed 21.6s, est remaining 32.4s, peak mem 5577MB, user 631.3s, sys 8.9s, output queue size 195
progress 45% @chr8:58000001, elapsed 24.9s, est remaining 30.4s, peak mem 5582MB, user 722.6s, sys 9.7s, output queue size 356
progress 50% @chr9:81000001, elapsed 27.4s, est remaining 27.4s, peak mem 5652MB, user 798.9s, sys 10.1s, output queue size 366
progress 55% @chr10:104000001, elapsed 30.7s, est remaining 25.1s, peak mem 5970MB, user 902.2s, sys 10.9s, output queue size 348
progress 60% @chr12:5000001, elapsed 34.3s, est remaining 22.8s, peak mem 5970MB, user 995.0s, sys 11.6s, output queue size 510
progress 65% @chr12:123000001, elapsed 37.3s, est remaining 20.1s, peak mem 5970MB, user 1107.6s, sys 12.3s, output queue size 474
progress 70% @chr14:79000001, elapsed 39.1s, est remaining 16.7s, peak mem 5970MB, user 1175.3s, sys 12.7s, output queue size 299
progress 75% @chr16:42000001, elapsed 42.7s, est remaining 14.2s, peak mem 5970MB, user 1269.2s, sys 13.4s, output queue size 461
progress 80% @chr18:29000001, elapsed 48.7s, est remaining 12.2s, peak mem 6183MB, user 1412.7s, sys 14.3s, output queue size 623
progress 85% @chr20:23000001, elapsed 54.5s, est remaining 9.6s, peak mem 6216MB, user 1617.8s, sys 16.1s, output queue size 351
progress 90% @chrX:42000001, elapsed 57.4s, est remaining 6.4s, peak mem 6216MB, user 1722.3s, sys 17.0s, output queue size 513
progress 95% @chrY:54000001, elapsed 59.1s, est remaining 3.1s, peak mem 6216MB, user 1784.1s, sys 17.5s, output queue size 240
progress 100% @chr22:23000001, elapsed 67.0s, est remaining 0.0s, peak mem 6216MB, user 1854.5s, sys 18.0s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 56390667151
reads: 1090474054
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 880.121 user 15.420 sys 894.289 real
done: 1 calls 0.000 user 0.000 sys 0.008 real
exec_no_coor: 1 calls 0.012 user 0.000 sys 0.017 real
execute: 1 calls 0.008 user 0.002 sys 66.993 real
idle: 270 calls 0.148 user 0.001 sys 233.933 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6518505472 mem 1855.576 user 18.109 sys 68.242 real