Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/ae422e06771eeefe1dfbe4dc1a440f/1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/78c90af3e99e7088a6f9041cd73644/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/ae422e06771eeefe1dfbe4dc1a440f/1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/78c90af3e99e7088a6f9041cd73644/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:117000001, elapsed 2.3s, est remaining 43.3s, peak mem 1512MB, user 54.7s, sys 1.7s, output queue size 145
progress 10% @chr2:79000001, elapsed 4.0s, est remaining 35.6s, peak mem 1873MB, user 111.4s, sys 2.4s, output queue size 48
progress 15% @chr2:214000001, elapsed 6.0s, est remaining 33.7s, peak mem 2333MB, user 168.5s, sys 3.5s, output queue size 122
progress 20% @chr3:168000001, elapsed 7.7s, est remaining 30.7s, peak mem 2333MB, user 222.4s, sys 4.2s, output queue size 141
progress 25% @chr4:124000001, elapsed 9.2s, est remaining 27.7s, peak mem 2389MB, user 270.0s, sys 4.7s, output queue size 302
progress 30% @chr5:38000001, elapsed 10.5s, est remaining 24.5s, peak mem 2440MB, user 308.8s, sys 5.1s, output queue size 464
progress 35% @chr6:81000001, elapsed 12.3s, est remaining 22.8s, peak mem 2508MB, user 356.2s, sys 5.4s, output queue size 625
progress 40% @chr7:56000001, elapsed 14.1s, est remaining 21.2s, peak mem 2579MB, user 417.2s, sys 5.9s, output queue size 194
progress 45% @chr8:70000001, elapsed 16.2s, est remaining 19.8s, peak mem 2671MB, user 476.1s, sys 6.4s, output queue size 204
progress 50% @chr8:127000001, elapsed 17.9s, est remaining 17.9s, peak mem 2713MB, user 527.8s, sys 6.7s, output queue size 366
progress 55% @chr10:32000001, elapsed 19.9s, est remaining 16.3s, peak mem 2825MB, user 589.3s, sys 7.1s, output queue size 348
progress 60% @chr12:1000001, elapsed 22.0s, est remaining 14.7s, peak mem 2838MB, user 651.9s, sys 7.6s, output queue size 510
progress 65% @chr12:102000001, elapsed 24.0s, est remaining 12.9s, peak mem 2885MB, user 714.2s, sys 8.0s, output queue size 672
progress 70% @chr14:82000001, elapsed 25.4s, est remaining 10.9s, peak mem 2899MB, user 757.8s, sys 8.3s, output queue size 833
progress 75% @chr16:41000001, elapsed 27.5s, est remaining 9.2s, peak mem 2899MB, user 818.7s, sys 8.7s, output queue size 461
progress 80% @chr18:25000001, elapsed 30.7s, est remaining 7.7s, peak mem 2947MB, user 911.5s, sys 9.3s, output queue size 190
progress 85% @chr20:39000001, elapsed 33.3s, est remaining 5.9s, peak mem 2947MB, user 1003.6s, sys 9.9s, output queue size 351
progress 90% @chrX:34000001, elapsed 35.1s, est remaining 3.9s, peak mem 2962MB, user 1063.8s, sys 10.4s, output queue size 78
progress 95% @chrY:55000001, elapsed 36.2s, est remaining 1.9s, peak mem 2976MB, user 1098.1s, sys 10.8s, output queue size 240
progress 100% @chr22:23000001, elapsed 39.0s, est remaining 0.0s, peak mem 2976MB, user 1126.1s, sys 11.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34430769148
reads: 702845646
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 555.008 user 9.092 sys 563.227 real
done: 1 calls 0.013 user 0.009 sys 0.029 real
exec_no_coor: 1 calls 0.000 user 0.028 sys 0.044 real
execute: 1 calls 0.000 user 0.008 sys 39.038 real
idle: 135 calls 0.155 user 0.001 sys 102.263 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 3121459200 mem 1127.044 user 11.239 sys 40.251 real