Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 90304400
total bases: 13635964400
Q20 bases: 13266158233(97.288%)
Q30 bases: 12589186235(92.3234%)
Q40 bases: 12589186235(92.3234%)
Read2 before filtering:
total reads: 90304400
total bases: 13635964400
Q20 bases: 13045443788(95.6694%)
Q30 bases: 12043582244(88.3222%)
Q40 bases: 12043582244(88.3222%)
Read1 after filtering:
total reads: 88952568
total bases: 12832366134
Q20 bases: 12555838125(97.8451%)
Q30 bases: 11959954043(93.2015%)
Q40 bases: 11959954043(93.2015%)
Read2 after filtering:
total reads: 88952568
total bases: 12833571040
Q20 bases: 12385682936(96.51%)
Q30 bases: 11514528584(89.7219%)
Q40 bases: 11514528584(89.7219%)
Filtering result:
reads passed filter: 177905136
reads failed due to low quality: 2689846
reads failed due to too many N: 9336
reads failed due to too short: 4482
reads with adapter trimmed: 32322177
bases trimmed due to adapters: 1201998670
Duplication rate: 12.2043%
Insert size peak (evaluated by paired-end reads): 179
JSON report: 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.html
fastp --in1 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L004_R1_001.fastq.gz --in2 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_S35_L004_R2_001.fastq.gz --out1 1029_FRC-T1-TDNA-1_A23MHWWLT4_1/1029_FRC-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_FRC-T1-TDNA-1_A23MHWWLT4_1/1029_FRC-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4
fastp v1.0.1, time used: 1007 seconds