cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 7.6s, est remaining 145.0s, peak mem 4585MB, user 197.7s, sys 5.4s, output queue size 173
progress 10% @chr2:17785142, elapsed 14.9s, est remaining 134.0s, peak mem 5440MB, user 390.9s, sys 7.3s, output queue size 643
progress 15% @chr2:190296813, elapsed 22.7s, est remaining 128.6s, peak mem 5911MB, user 595.7s, sys 9.4s, output queue size 295
progress 20% @chr3:98784945, elapsed 30.9s, est remaining 123.5s, peak mem 6279MB, user 814.3s, sys 11.1s, output queue size 417
progress 25% @chr4:88457270, elapsed 37.3s, est remaining 111.8s, peak mem 6279MB, user 979.4s, sys 12.7s, output queue size 90
progress 30% @chr5:147617911, elapsed 42.7s, est remaining 99.7s, peak mem 6279MB, user 1119.6s, sys 13.9s, output queue size 196
progress 35% @chr6:132401163, elapsed 51.2s, est remaining 95.1s, peak mem 6655MB, user 1343.4s, sys 15.5s, output queue size 643
progress 40% @chr7:102248412, elapsed 59.5s, est remaining 89.2s, peak mem 7048MB, user 1555.2s, sys 17.0s, output queue size 1423
progress 45% @chr9:990041, elapsed 68.6s, est remaining 83.9s, peak mem 7361MB, user 1803.7s, sys 18.8s, output queue size 15
progress 50% @chr10:32016829, elapsed 76.7s, est remaining 76.7s, peak mem 7446MB, user 2018.5s, sys 20.2s, output queue size 102
progress 55% @chr11:48324941, elapsed 83.7s, est remaining 68.4s, peak mem 7446MB, user 2200.0s, sys 21.2s, output queue size 14
progress 60% @chr12:11800919, elapsed 92.0s, est remaining 61.3s, peak mem 7446MB, user 2421.2s, sys 22.6s, output queue size 787
progress 65% @chr13:49220338, elapsed 99.5s, est remaining 53.6s, peak mem 7446MB, user 2623.1s, sys 23.9s, output queue size 547
progress 70% @chr15:43160681, elapsed 106.6s, est remaining 45.7s, peak mem 7446MB, user 2810.6s, sys 25.1s, output queue size 455
progress 75% @chr16:30925731, elapsed 115.6s, est remaining 38.5s, peak mem 7446MB, user 3055.7s, sys 26.6s, output queue size 31
progress 80% @chr17:42698618, elapsed 124.4s, est remaining 31.1s, peak mem 7446MB, user 3295.4s, sys 28.1s, output queue size 705
progress 85% @chr19:5696054, elapsed 132.2s, est remaining 23.3s, peak mem 7446MB, user 3503.4s, sys 29.4s, output queue size 402
progress 90% @chr19:55613619, elapsed 140.1s, est remaining 15.6s, peak mem 7446MB, user 3716.8s, sys 30.7s, output queue size 82
progress 95% @chr22:36523895, elapsed 148.6s, est remaining 7.8s, peak mem 7446MB, user 3945.5s, sys 32.1s, output queue size 23
progress 100% @chr6_GL000251v2_alt:3939000, elapsed 156.3s, est remaining 0.0s, peak mem 7446MB, user 4149.6s, sys 33.4s, output queue size 7
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50938789543
reads: 986308211
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1951.439 user 24.548 sys 2057.479 real
done: 1 calls 0.272 user 0.655 sys 0.927 real
execute: 1 calls 0.001 user 0.010 sys 156.298 real
fetch_reads: 208647 calls 173.869 user 0.416 sys 180.498 real
fetch_ref: 206987 calls 1.020 user 0.874 sys 2.024 real
fetch_vcf: 206987 calls 80.140 user 2.160 sys 85.520 real
idle: 161 calls 0.304 user 0.001 sys 33.723 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 468055 calls 2327.219 user 4.054 sys 2399.232 real
overall: 7808299008 mem 4718.468 user 35.364 sys 157.860 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory