File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2460617fd2dad70c71eba601b4d67b/.command.log
Size
1.2 KB
Task
DAQ:CONTROL_METRICS:POSITIVE_SOMATIC_METRICS:POSITIVE_SOMATIC_SNV_INDEL (positive_somatic_control_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/hd789/hd789_coa.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2460617fd2dad70c71eba601b4d67b/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/hd789/hd789_coa.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2460617fd2dad70c71eba601b4d67b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/5c18adf0cab7f21ad1eb1d4687f223/positive_somatic_control_1.snv_indel.phased.vep.final.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/5c18adf0cab7f21ad1eb1d4687f223/positive_somatic_control_1.snv_indel.phased.vep.final.vcf.gz
==> STAGING COMPLETE (8 inputs)

Lines   total/split/joined/realigned/skipped:	5/0/0/0/0
Lines   total/split/joined/realigned/skipped:	54656/0/0/0/0