Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/982bf300f65e2fb661cecb02f6e305/1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/e909894e47761ffed6bfc847ee1999/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/982bf300f65e2fb661cecb02f6e305/1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/e909894e47761ffed6bfc847ee1999/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_N5D-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 8.4s, est remaining 159.9s, peak mem 6163MB, user 185.5s, sys 3.8s, output queue size 150
progress 10% @chr2:46000001, elapsed 14.9s, est remaining 134.5s, peak mem 7774MB, user 407.7s, sys 7.5s, output queue size 117
progress 15% @chr2:238000001, elapsed 21.8s, est remaining 123.5s, peak mem 12298MB, user 615.3s, sys 13.5s, output queue size 203
progress 20% @chr3:174000001, elapsed 28.3s, est remaining 113.3s, peak mem 13831MB, user 803.5s, sys 19.0s, output queue size 283
progress 25% @chr4:129000001, elapsed 33.4s, est remaining 100.1s, peak mem 13831MB, user 968.6s, sys 21.0s, output queue size 302
progress 30% @chr5:94000001, elapsed 37.3s, est remaining 87.0s, peak mem 13831MB, user 1074.8s, sys 22.0s, output queue size 464
progress 35% @chr6:70000001, elapsed 43.8s, est remaining 81.4s, peak mem 13964MB, user 1242.5s, sys 23.5s, output queue size 625
progress 40% @chr7:66000001, elapsed 50.9s, est remaining 76.3s, peak mem 14591MB, user 1446.7s, sys 25.1s, output queue size 786
progress 45% @chr8:79000001, elapsed 58.1s, est remaining 71.0s, peak mem 15920MB, user 1689.0s, sys 27.1s, output queue size 356
progress 50% @chr9:102000001, elapsed 64.1s, est remaining 64.1s, peak mem 16301MB, user 1858.3s, sys 28.6s, output queue size 366
progress 55% @chr10:104000001, elapsed 71.8s, est remaining 58.8s, peak mem 16499MB, user 2091.9s, sys 30.2s, output queue size 400
progress 60% @chr12:1000001, elapsed 79.9s, est remaining 53.3s, peak mem 16499MB, user 2334.8s, sys 31.6s, output queue size 562
progress 65% @chr13:35000001, elapsed 87.9s, est remaining 47.3s, peak mem 16903MB, user 2530.4s, sys 32.9s, output queue size 724
progress 70% @chr14:20000001, elapsed 92.5s, est remaining 39.6s, peak mem 16912MB, user 2704.2s, sys 34.2s, output queue size 885
progress 75% @chr16:42000001, elapsed 100.9s, est remaining 33.6s, peak mem 16912MB, user 2995.4s, sys 36.2s, output queue size 461
progress 80% @chr18:11000001, elapsed 113.8s, est remaining 28.4s, peak mem 16964MB, user 3351.2s, sys 38.3s, output queue size 623
progress 85% @chr19:52000001, elapsed 125.8s, est remaining 22.2s, peak mem 16997MB, user 3729.5s, sys 40.2s, output queue size 785
progress 90% @chrX:42000001, elapsed 132.8s, est remaining 14.8s, peak mem 17077MB, user 3971.4s, sys 41.4s, output queue size 513
progress 95% @chrY:55000001, elapsed 136.8s, est remaining 7.2s, peak mem 17299MB, user 4095.0s, sys 42.4s, output queue size 675
progress 100% @chr22:23000001, elapsed 149.8s, est remaining 0.0s, peak mem 17299MB, user 4276.5s, sys 43.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 108867292734
reads: 2060211395
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1714.842 user 38.693 sys 1749.091 real
done: 1 calls 0.326 user 0.069 sys 0.400 real
exec_no_coor: 1 calls 0.013 user 0.013 sys 0.033 real
execute: 1 calls 0.005 user 0.002 sys 149.840 real
idle: 372 calls 0.194 user 0.001 sys 366.571 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 18139566080 mem 4278.708 user 44.035 sys 152.060 real