Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/2f3d91d62b83596c909c19e8e8b32f/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/c94e432c23d9473dfeb99bba33fdad/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/b4c346f88b19f57b5d2db35e6eeab5/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/1942a41d5f8feac306bab971b2eec2/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/29f847483511abb22d51de73c82751/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/414d1696734a17cfb8894a550dab40/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/9622235fefc73c57d6a27c49be16a1/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/8a22718fd785d14bfaa7f6d36ce60a/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/508050cf44cc27491579c249fcacbc/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/689e41790310c23ca4748621d4cc25/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/122b37b5a45265a777a270ee6ad841/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/18d6bc8ac37bd7f6ab642db733a227/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/b32c2caecc11a28beaaceb967dc40e/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/750f42f1c28f93c4a5f39bcf5f5f08/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/25f30501fce1741008f52074a6844b/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/db9e2b51a7fd20686127d02844a21f/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8f5d6c8004503311ef7a1ff12a884d/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/a33e4c10422f036ddc784d2588b8bf/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/8b273be127e8f45f886795e436dc1e/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/6c3b2c68f6b4c8b589fb071d7c773b/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/7352e2b10b954d2a0c3223ee76978b/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/d8f2c6ab74d4afaa95747355666796/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/bf4c03dcd9649011651bb21f08e370/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/2d1b8072dcdb341e1f10ca6573da34/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/ca3a42c28ee76776b6a0569df2c090/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/e0a5298faae8608613473172500b0b/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/215fb76994ed480e55133a6a8db783/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/6282eb2a908aae6bd01896a1b23497/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/d64f238e9bbb689492f100167f3603/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/0bec8e766ae655e7cbbd92e7d42f3a/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/5d8ac09fe1e53f8122987589bc81aa/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/fe172b519520c673fd1f1a832d75c8/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/689e41790310c23ca4748621d4cc25/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/359a0c738901554043ff2a02e75c1d/1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (36 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory