Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/b41d3e08b4488666beed74516013be/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/ef37e6069f2668d49419f98ecb4969/1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/FINAL_hotspot_list_07302025_hg38_sorted.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/b41d3e08b4488666beed74516013be/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/ef37e6069f2668d49419f98ecb4969/1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:173000001, elapsed 2.8s, est remaining 53.7s, peak mem 2240MB, user 64.9s, sys 1.6s, output queue size 146
progress 10% @chr2:5000001, elapsed 5.0s, est remaining 45.4s, peak mem 2929MB, user 137.8s, sys 2.5s, output queue size 117
progress 15% @chr3:8000001, elapsed 7.4s, est remaining 41.7s, peak mem 3627MB, user 210.3s, sys 4.0s, output queue size 122
progress 20% @chr3:174000001, elapsed 9.4s, est remaining 37.5s, peak mem 3627MB, user 271.7s, sys 4.9s, output queue size 141
progress 25% @chr4:124000001, elapsed 11.1s, est remaining 33.4s, peak mem 3672MB, user 324.6s, sys 5.7s, output queue size 302
progress 30% @chr5:81000001, elapsed 12.4s, est remaining 29.0s, peak mem 3672MB, user 362.9s, sys 6.2s, output queue size 464
progress 35% @chr6:56000001, elapsed 14.0s, est remaining 26.0s, peak mem 3731MB, user 404.3s, sys 6.6s, output queue size 625
progress 40% @chr7:79000001, elapsed 16.1s, est remaining 24.1s, peak mem 4082MB, user 471.9s, sys 7.5s, output queue size 231
progress 45% @chr7:151000001, elapsed 18.7s, est remaining 22.8s, peak mem 4358MB, user 548.9s, sys 8.3s, output queue size 204
progress 50% @chr9:87000001, elapsed 20.5s, est remaining 20.5s, peak mem 4600MB, user 591.5s, sys 8.7s, output queue size 366
progress 55% @chr10:99000001, elapsed 22.7s, est remaining 18.5s, peak mem 4600MB, user 656.2s, sys 9.4s, output queue size 527
progress 60% @chr12:1000001, elapsed 24.7s, est remaining 16.4s, peak mem 4622MB, user 716.0s, sys 9.9s, output queue size 647
progress 65% @chr12:114000001, elapsed 26.8s, est remaining 14.4s, peak mem 4680MB, user 796.5s, sys 10.5s, output queue size 666
progress 70% @chr14:71000001, elapsed 28.3s, est remaining 12.1s, peak mem 4758MB, user 836.2s, sys 10.9s, output queue size 827
progress 75% @chr16:42000001, elapsed 30.9s, est remaining 10.3s, peak mem 4849MB, user 907.0s, sys 11.5s, output queue size 989
progress 80% @chr17:65000001, elapsed 34.5s, est remaining 8.6s, peak mem 4868MB, user 1001.0s, sys 12.1s, output queue size 1151
progress 85% @chr20:36000001, elapsed 37.7s, est remaining 6.7s, peak mem 4938MB, user 1108.6s, sys 12.9s, output queue size 785
progress 90% @chrX:15000001, elapsed 40.2s, est remaining 4.5s, peak mem 4956MB, user 1208.3s, sys 13.6s, output queue size 513
progress 95% @chrY:50000001, elapsed 41.6s, est remaining 2.2s, peak mem 4992MB, user 1243.0s, sys 13.9s, output queue size 675
progress 100% @chr15:88000001, elapsed 46.9s, est remaining 0.0s, peak mem 4992MB, user 1305.4s, sys 14.5s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 41196981261
reads: 815252332
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 645.335 user 12.493 sys 658.491 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.013 user 0.000 sys 0.027 real
execute: 1 calls 0.004 user 0.002 sys 46.958 real
idle: 176 calls 0.100 user 0.001 sys 164.960 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5234688000 mem 1306.468 user 14.749 sys 48.253 real