cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_HTI-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 8.5s, est remaining 160.6s, peak mem 5136MB, user 224.5s, sys 5.5s, output queue size 177
progress 10% @chr2:21001730, elapsed 16.0s, est remaining 143.9s, peak mem 6082MB, user 427.2s, sys 8.5s, output queue size 641
progress 15% @chr2:190249640, elapsed 26.0s, est remaining 147.5s, peak mem 7675MB, user 701.1s, sys 12.1s, output queue size 287
progress 20% @chr3:98799372, elapsed 35.3s, est remaining 141.2s, peak mem 7744MB, user 955.5s, sys 14.4s, output queue size 428
progress 25% @chr4:88521888, elapsed 42.3s, est remaining 126.9s, peak mem 8059MB, user 1141.4s, sys 16.2s, output queue size 90
progress 30% @chr5:146514854, elapsed 48.8s, est remaining 113.9s, peak mem 8059MB, user 1312.7s, sys 17.7s, output queue size 203
progress 35% @chr6:131949264, elapsed 58.0s, est remaining 107.8s, peak mem 8059MB, user 1562.6s, sys 20.3s, output queue size 638
progress 40% @chr7:128852591, elapsed 68.8s, est remaining 103.3s, peak mem 8604MB, user 1857.4s, sys 22.6s, output queue size 1430
progress 45% @chr9:2007196, elapsed 80.1s, est remaining 97.9s, peak mem 9053MB, user 2173.3s, sys 25.7s, output queue size 40
progress 50% @chr10:32016829, elapsed 89.7s, est remaining 89.7s, peak mem 9053MB, user 2437.1s, sys 27.8s, output queue size 106
progress 55% @chr11:48216810, elapsed 98.1s, est remaining 80.3s, peak mem 9053MB, user 2661.3s, sys 29.7s, output queue size 19
progress 60% @chr12:11752419, elapsed 107.8s, est remaining 71.8s, peak mem 9053MB, user 2925.1s, sys 31.8s, output queue size 795
progress 65% @chr13:49220338, elapsed 117.2s, est remaining 63.1s, peak mem 9053MB, user 3186.3s, sys 33.6s, output queue size 543
progress 70% @chr15:43151790, elapsed 126.0s, est remaining 54.0s, peak mem 9053MB, user 3425.7s, sys 35.8s, output queue size 455
progress 75% @chr16:30983850, elapsed 136.6s, est remaining 45.5s, peak mem 9053MB, user 3722.8s, sys 38.3s, output queue size 31
progress 80% @chr17:42687720, elapsed 147.3s, est remaining 36.8s, peak mem 9053MB, user 4020.8s, sys 40.7s, output queue size 706
progress 85% @chr19:5713134, elapsed 156.2s, est remaining 27.6s, peak mem 9053MB, user 4265.3s, sys 42.7s, output queue size 406
progress 90% @chr19:55517224, elapsed 165.4s, est remaining 18.4s, peak mem 9053MB, user 4520.4s, sys 44.8s, output queue size 63
progress 95% @chr22:36306414, elapsed 176.5s, est remaining 9.3s, peak mem 9053MB, user 4829.5s, sys 47.3s, output queue size 25
progress 100% @chrX:155773872, elapsed 185.9s, est remaining 0.0s, peak mem 9111MB, user 5089.1s, sys 49.6s, output queue size 575
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 74334244054
reads: 1460016157
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2659.434 user 37.919 sys 2810.962 real
done: 1 calls 0.374 user 0.389 sys 0.769 real
execute: 1 calls 0.005 user 0.000 sys 185.898 real
fetch_reads: 208647 calls 251.968 user 0.857 sys 258.883 real
fetch_ref: 206922 calls 0.925 user 0.966 sys 2.253 real
fetch_vcf: 206922 calls 80.428 user 2.068 sys 86.737 real
idle: 124 calls 0.166 user 0.000 sys 32.351 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 506160 calls 2378.821 user 7.070 sys 2459.368 real
overall: 9554034688 mem 5603.007 user 52.013 sys 187.498 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory