File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/875016a2d8a7f5d9af287ee13450de/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 100141319
total bases: 15121339169
Q20 bases: 14734865081(97.4442%)
Q30 bases: 14020004564(92.7167%)
Q40 bases: 14020004564(92.7167%)

Read2 before filtering:
total reads: 100141319
total bases: 15121339169
Q20 bases: 14459043289(95.6201%)
Q30 bases: 13338047791(88.2068%)
Q40 bases: 13338047791(88.2068%)

Read1 after filtering:
total reads: 98416165
total bases: 14315605195
Q20 bases: 14023711733(97.961%)
Q30 bases: 13394555464(93.5661%)
Q40 bases: 13394555464(93.5661%)

Read2 after filtering:
total reads: 98416165
total bases: 14316840862
Q20 bases: 13813816172(96.4865%)
Q30 bases: 12831743963(89.6269%)
Q40 bases: 12831743963(89.6269%)

Filtering result:
reads passed filter: 196832330
reads failed due to low quality: 3422454
reads failed due to too many N: 22920
reads failed due to too short: 4934
reads with adapter trimmed: 29805417
bases trimmed due to adapters: 1093485884

Duplication rate: 13.338%

Insert size peak (evaluated by paired-end reads): 194

JSON report: 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L002_R1_001.fastq.gz --in2 1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L002_R2_001.fastq.gz --out1 1029_T05-T1-TDNA-1_A23MHWWLT4_1/1029_T05-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_T05-T1-TDNA-1_A23MHWWLT4_1/1029_T05-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 785 seconds