File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/503019cf600ea5525aa8a3d5c8ee35/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_76X-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_76X-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.0s, est remaining 76.1s, peak mem 3094MB, user 84.1s, sys 2.2s, output queue size 150
progress 10% @chr2:90000001, elapsed 6.8s, est remaining 60.9s, peak mem 3921MB, user 183.7s, sys 4.0s, output queue size 166
progress 15% @chr3:3000001, elapsed 9.7s, est remaining 55.2s, peak mem 4799MB, user 275.0s, sys 6.2s, output queue size 210
progress 20% @chr3:168000001, elapsed 12.4s, est remaining 49.6s, peak mem 4849MB, user 361.0s, sys 7.2s, output queue size 141
progress 25% @chr4:124000001, elapsed 14.6s, est remaining 43.9s, peak mem 4913MB, user 427.9s, sys 7.7s, output queue size 302
progress 30% @chr5:99000001, elapsed 16.4s, est remaining 38.2s, peak mem 4965MB, user 474.5s, sys 8.1s, output queue size 464
progress 35% @chr6:82000001, elapsed 19.2s, est remaining 35.7s, peak mem 5330MB, user 554.6s, sys 9.0s, output queue size 429
progress 40% @chr7:64000001, elapsed 22.1s, est remaining 33.2s, peak mem 5818MB, user 644.4s, sys 9.8s, output queue size 197
progress 45% @chr8:75000001, elapsed 25.3s, est remaining 30.9s, peak mem 6094MB, user 737.9s, sys 10.8s, output queue size 356
progress 50% @chr9:88000001, elapsed 27.7s, est remaining 27.7s, peak mem 6269MB, user 816.7s, sys 11.5s, output queue size 324
progress 55% @chr10:104000001, elapsed 30.9s, est remaining 25.3s, peak mem 6576MB, user 910.6s, sys 12.3s, output queue size 348
progress 60% @chr12:1000001, elapsed 34.3s, est remaining 22.9s, peak mem 6576MB, user 1014.5s, sys 13.3s, output queue size 510
progress 65% @chr13:33000001, elapsed 37.2s, est remaining 20.1s, peak mem 6576MB, user 1114.1s, sys 13.9s, output queue size 143
progress 70% @chr14:78000001, elapsed 39.1s, est remaining 16.8s, peak mem 6591MB, user 1175.5s, sys 14.3s, output queue size 299
progress 75% @chr16:42000001, elapsed 42.6s, est remaining 14.2s, peak mem 6616MB, user 1270.8s, sys 15.0s, output queue size 461
progress 80% @chr17:63000001, elapsed 48.1s, est remaining 12.0s, peak mem 6774MB, user 1413.3s, sys 16.0s, output queue size 623
progress 85% @chr19:55000001, elapsed 53.0s, est remaining 9.4s, peak mem 6891MB, user 1585.8s, sys 17.0s, output queue size 351
progress 90% @chrX:36000001, elapsed 56.0s, est remaining 6.2s, peak mem 6912MB, user 1672.8s, sys 17.6s, output queue size 513
progress 95% @chrY:55000001, elapsed 57.7s, est remaining 3.0s, peak mem 7093MB, user 1740.0s, sys 18.1s, output queue size 240
progress 100% @chr22:23000001, elapsed 64.9s, est remaining 0.0s, peak mem 7093MB, user 1806.4s, sys 18.7s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 57443072063
reads: 1090378638
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 901.157 user 16.452 sys 921.185 real
done: 1 calls 0.017 user 0.019 sys 0.044 real
exec_no_coor: 1 calls 0.000 user 0.011 sys 0.023 real
execute: 1 calls 0.005 user 0.001 sys 64.879 real
idle: 255 calls 0.166 user 0.001 sys 215.139 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7438139392 mem 1807.521 user 18.917 sys 66.174 real