Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/982bf300f65e2fb661cecb02f6e305/1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/4eaecaedfe60601ea1b7334bb921e6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/982bf300f65e2fb661cecb02f6e305/1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/4eaecaedfe60601ea1b7334bb921e6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_N5D-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:181000001, elapsed 7.0s, est remaining 132.4s, peak mem 5854MB, user 149.0s, sys 4.7s, output queue size 150
progress 10% @chr2:90000001, elapsed 12.3s, est remaining 110.9s, peak mem 7796MB, user 333.5s, sys 9.7s, output queue size 117
progress 15% @chr2:237000001, elapsed 18.1s, est remaining 102.6s, peak mem 11540MB, user 507.3s, sys 12.5s, output queue size 203
progress 20% @chr3:165000001, elapsed 23.4s, est remaining 93.7s, peak mem 13016MB, user 651.6s, sys 14.7s, output queue size 364
progress 25% @chr4:124000001, elapsed 27.7s, est remaining 83.1s, peak mem 13216MB, user 803.4s, sys 19.1s, output queue size 302
progress 30% @chr5:100000001, elapsed 31.1s, est remaining 72.6s, peak mem 13216MB, user 893.3s, sys 19.9s, output queue size 464
progress 35% @chr6:27000001, elapsed 36.5s, est remaining 67.7s, peak mem 13395MB, user 1034.8s, sys 21.5s, output queue size 625
progress 40% @chr7:67000001, elapsed 42.5s, est remaining 63.7s, peak mem 14064MB, user 1203.7s, sys 23.6s, output queue size 786
progress 45% @chr8:54000001, elapsed 48.7s, est remaining 59.6s, peak mem 15375MB, user 1412.2s, sys 25.9s, output queue size 356
progress 50% @chr9:81000001, elapsed 53.9s, est remaining 53.9s, peak mem 15657MB, user 1557.2s, sys 27.5s, output queue size 366
progress 55% @chr10:104000001, elapsed 60.1s, est remaining 49.2s, peak mem 15911MB, user 1750.4s, sys 28.8s, output queue size 400
progress 60% @chr11:94000001, elapsed 66.4s, est remaining 44.3s, peak mem 15911MB, user 1924.6s, sys 30.2s, output queue size 562
progress 65% @chr13:39000001, elapsed 72.9s, est remaining 39.3s, peak mem 16006MB, user 2089.5s, sys 31.4s, output queue size 724
progress 70% @chr13:102000001, elapsed 76.9s, est remaining 32.9s, peak mem 16171MB, user 2211.9s, sys 32.3s, output queue size 885
progress 75% @chr16:41000001, elapsed 84.1s, est remaining 28.0s, peak mem 16171MB, user 2493.2s, sys 34.6s, output queue size 461
progress 80% @chr18:13000001, elapsed 94.2s, est remaining 23.5s, peak mem 16386MB, user 2765.5s, sys 36.6s, output queue size 623
progress 85% @chr19:15000001, elapsed 103.7s, est remaining 18.3s, peak mem 16561MB, user 3045.9s, sys 38.5s, output queue size 785
progress 90% @chrX:36000001, elapsed 109.2s, est remaining 12.1s, peak mem 16726MB, user 3220.1s, sys 39.8s, output queue size 947
progress 95% @chrY:54000001, elapsed 112.6s, est remaining 5.9s, peak mem 16880MB, user 3359.9s, sys 40.9s, output queue size 675
progress 100% @chr15:88000001, elapsed 128.3s, est remaining 0.0s, peak mem 16880MB, user 3532.4s, sys 41.8s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 108867292734
reads: 2060211395
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1670.791 user 37.622 sys 1710.994 real
done: 1 calls 0.024 user 0.059 sys 0.092 real
exec_no_coor: 1 calls 0.022 user 0.000 sys 0.031 real
execute: 1 calls 0.007 user 0.002 sys 128.378 real
idle: 469 calls 0.160 user 0.001 sys 435.389 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 17700147200 mem 3533.551 user 42.113 sys 129.751 real