Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/e791dd8a460bb4060c765a1ccd6fc1/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/05f80ecb4bdae6b39b61214c403343/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/e791dd8a460bb4060c765a1ccd6fc1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/05f80ecb4bdae6b39b61214c403343/1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md.bam
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_5TB-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:154000001, elapsed 7.0s, est remaining 132.2s, peak mem 5153MB, user 155.6s, sys 4.0s, output queue size 146
progress 10% @chr2:58000001, elapsed 13.1s, est remaining 118.2s, peak mem 6753MB, user 337.3s, sys 8.0s, output queue size 166
progress 15% @chr2:224000001, elapsed 18.1s, est remaining 102.8s, peak mem 8648MB, user 518.2s, sys 14.4s, output queue size 122
progress 20% @chr3:174000001, elapsed 22.6s, est remaining 90.6s, peak mem 9096MB, user 641.0s, sys 15.4s, output queue size 283
progress 25% @chr4:124000001, elapsed 26.4s, est remaining 79.3s, peak mem 9096MB, user 769.1s, sys 16.7s, output queue size 302
progress 30% @chr5:107000001, elapsed 29.8s, est remaining 69.5s, peak mem 9096MB, user 867.4s, sys 17.4s, output queue size 464
progress 35% @chr6:70000001, elapsed 34.8s, est remaining 64.5s, peak mem 9096MB, user 1001.0s, sys 18.5s, output queue size 625
progress 40% @chr7:48000001, elapsed 40.1s, est remaining 60.2s, peak mem 9242MB, user 1144.7s, sys 19.4s, output queue size 786
progress 45% @chr8:74000001, elapsed 45.6s, est remaining 55.7s, peak mem 9257MB, user 1333.2s, sys 21.0s, output queue size 356
progress 50% @chr8:143000001, elapsed 50.4s, est remaining 50.4s, peak mem 9624MB, user 1469.9s, sys 21.9s, output queue size 366
progress 55% @chr10:73000001, elapsed 55.9s, est remaining 45.8s, peak mem 9831MB, user 1632.7s, sys 23.1s, output queue size 527
progress 60% @chr11:117000001, elapsed 61.4s, est remaining 40.9s, peak mem 9831MB, user 1804.1s, sys 24.1s, output queue size 510
progress 65% @chr13:24000001, elapsed 66.8s, est remaining 36.0s, peak mem 9876MB, user 1952.4s, sys 25.1s, output queue size 672
progress 70% @chr14:76000001, elapsed 70.2s, est remaining 30.1s, peak mem 9909MB, user 2056.1s, sys 25.7s, output queue size 833
progress 75% @chr16:42000001, elapsed 76.1s, est remaining 25.4s, peak mem 9911MB, user 2271.4s, sys 26.7s, output queue size 461
progress 80% @chr18:10000001, elapsed 85.0s, est remaining 21.2s, peak mem 10134MB, user 2509.4s, sys 28.1s, output queue size 623
progress 85% @chr19:55000001, elapsed 93.1s, est remaining 16.4s, peak mem 10134MB, user 2769.0s, sys 29.5s, output queue size 785
progress 90% @chrX:36000001, elapsed 98.1s, est remaining 10.9s, peak mem 10134MB, user 2937.4s, sys 30.7s, output queue size 513
progress 95% @chrY:55000001, elapsed 100.9s, est remaining 5.3s, peak mem 10142MB, user 3023.9s, sys 31.2s, output queue size 675
progress 100% @chr22:23000001, elapsed 112.9s, est remaining 0.0s, peak mem 10520MB, user 3168.0s, sys 32.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 89084754634
reads: 1834997666
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1425.299 user 28.387 sys 1451.245 real
done: 1 calls 0.025 user 0.018 sys 0.050 real
exec_no_coor: 1 calls 0.016 user 0.016 sys 0.042 real
execute: 1 calls 0.001 user 0.000 sys 112.887 real
idle: 356 calls 0.160 user 0.001 sys 328.168 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 11031855104 mem 3169.219 user 32.447 sys 114.180 real