cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo AlignmentStat 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.insert_size_metrics --algo QualDistribution 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:159000001, elapsed 8.8s, est remaining 167.0s, peak mem 2436MB, user 160.1s, sys 1.5s, output queue size 42
progress 10% @chr2:84000001, elapsed 20.2s, est remaining 181.8s, peak mem 4475MB, user 505.4s, sys 3.8s, output queue size 173
progress 15% @chr3:8000001, elapsed 27.7s, est remaining 156.9s, peak mem 4755MB, user 786.6s, sys 5.2s, output queue size 328
progress 20% @chr3:69000001, elapsed 33.8s, est remaining 135.1s, peak mem 4755MB, user 973.5s, sys 5.8s, output queue size 489
progress 25% @chr4:129000001, elapsed 39.1s, est remaining 117.2s, peak mem 4825MB, user 1124.3s, sys 6.3s, output queue size 650
progress 30% @chr5:107000001, elapsed 42.9s, est remaining 100.1s, peak mem 4828MB, user 1240.3s, sys 6.8s, output queue size 812
progress 35% @chr6:82000001, elapsed 51.6s, est remaining 95.9s, peak mem 5207MB, user 1488.5s, sys 7.8s, output queue size 625
progress 40% @chr6:152000001, elapsed 59.6s, est remaining 89.4s, peak mem 5443MB, user 1748.8s, sys 8.7s, output queue size 197
progress 45% @chr8:75000001, elapsed 68.7s, est remaining 84.0s, peak mem 5740MB, user 1982.5s, sys 9.6s, output queue size 359
progress 50% @chr8:38000001, elapsed 77.8s, est remaining 77.8s, peak mem 6140MB, user 2280.0s, sys 11.5s, output queue size 366
progress 55% @chr10:118000001, elapsed 88.3s, est remaining 72.2s, peak mem 6583MB, user 2597.8s, sys 12.3s, output queue size 253
progress 60% @chr12:2000001, elapsed 95.9s, est remaining 63.9s, peak mem 6637MB, user 2870.5s, sys 14.6s, output queue size 312
progress 65% @chr13:31000001, elapsed 105.0s, est remaining 56.5s, peak mem 6637MB, user 3099.5s, sys 15.6s, output queue size 474
progress 70% @chr13:102000001, elapsed 111.6s, est remaining 47.8s, peak mem 6637MB, user 3329.7s, sys 16.4s, output queue size 635
progress 75% @chr16:42000001, elapsed 121.0s, est remaining 40.3s, peak mem 6637MB, user 3657.3s, sys 17.4s, output queue size 121
progress 80% @chr17:50000001, elapsed 133.2s, est remaining 33.3s, peak mem 6637MB, user 3989.4s, sys 18.4s, output queue size 190
progress 85% @chr19:41000001, elapsed 145.7s, est remaining 25.7s, peak mem 6637MB, user 4388.7s, sys 19.2s, output queue size 351
progress 90% @chrX:30000001, elapsed 154.2s, est remaining 17.1s, peak mem 6637MB, user 4661.1s, sys 19.9s, output queue size 513
progress 95% @chrY:53000001, elapsed 159.7s, est remaining 8.4s, peak mem 6637MB, user 4854.8s, sys 20.4s, output queue size 240
progress 100% @chr22:23000001, elapsed 176.3s, est remaining 0.0s, peak mem 6637MB, user 5015.9s, sys 20.8s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 49280866937
reads: 991312774
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 821.469 user 15.453 sys 834.949 real
done: 1 calls 0.060 user 0.000 sys 0.062 real
exec_no_coor: 1 calls 0.013 user 0.013 sys 0.034 real
execute: 1 calls 0.005 user 0.003 sys 176.442 real
idle: 482 calls 0.156 user 0.000 sys 463.567 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6959534080 mem 5018.153 user 21.157 sys 177.758 real