File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/000c313780b49b12c6528566b02d96/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_I9B-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_I9B-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.9s, est remaining 92.5s, peak mem 3928MB, user 101.7s, sys 4.0s, output queue size 150
progress 10% @chr2:94000001, elapsed 8.7s, est remaining 78.6s, peak mem 4735MB, user 231.2s, sys 7.5s, output queue size 117
progress 15% @chr2:224000001, elapsed 13.7s, est remaining 77.9s, peak mem 8239MB, user 376.3s, sys 11.8s, output queue size 203
progress 20% @chr3:167000001, elapsed 17.5s, est remaining 69.9s, peak mem 8396MB, user 488.7s, sys 14.4s, output queue size 283
progress 25% @chr4:124000001, elapsed 20.7s, est remaining 62.1s, peak mem 8396MB, user 600.7s, sys 15.5s, output queue size 302
progress 30% @chr5:94000001, elapsed 23.2s, est remaining 54.1s, peak mem 8396MB, user 665.2s, sys 16.0s, output queue size 464
progress 35% @chr6:70000001, elapsed 27.4s, est remaining 50.9s, peak mem 8533MB, user 774.9s, sys 17.0s, output queue size 625
progress 40% @chr7:66000001, elapsed 32.3s, est remaining 48.5s, peak mem 9607MB, user 904.0s, sys 18.5s, output queue size 786
progress 45% @chr8:78000001, elapsed 37.1s, est remaining 45.3s, peak mem 9848MB, user 1080.7s, sys 20.4s, output queue size 356
progress 50% @chr9:37000001, elapsed 40.6s, est remaining 40.6s, peak mem 9967MB, user 1178.0s, sys 21.2s, output queue size 366
progress 55% @chr10:99000001, elapsed 45.0s, est remaining 36.8s, peak mem 10047MB, user 1324.2s, sys 22.4s, output queue size 348
progress 60% @chr12:1000001, elapsed 49.4s, est remaining 32.9s, peak mem 10047MB, user 1449.1s, sys 23.3s, output queue size 510
progress 65% @chr12:106000001, elapsed 54.0s, est remaining 29.1s, peak mem 10047MB, user 1571.0s, sys 24.0s, output queue size 672
progress 70% @chr14:24000001, elapsed 56.6s, est remaining 24.3s, peak mem 10047MB, user 1652.3s, sys 24.8s, output queue size 833
progress 75% @chr16:13000001, elapsed 61.3s, est remaining 20.4s, peak mem 10076MB, user 1819.9s, sys 26.1s, output queue size 461
progress 80% @chr18:9000001, elapsed 67.9s, est remaining 17.0s, peak mem 10188MB, user 1998.3s, sys 27.3s, output queue size 623
progress 85% @chr19:15000001, elapsed 74.0s, est remaining 13.1s, peak mem 10188MB, user 2186.5s, sys 28.6s, output queue size 785
progress 90% @chrX:34000001, elapsed 79.3s, est remaining 8.8s, peak mem 11141MB, user 2370.3s, sys 30.1s, output queue size 513
progress 95% @chrY:53000001, elapsed 82.7s, est remaining 4.4s, peak mem 11141MB, user 2464.6s, sys 30.9s, output queue size 675
progress 100% @chrX:67000001, elapsed 94.1s, est remaining 0.0s, peak mem 11141MB, user 2601.0s, sys 31.7s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 81150013433
reads: 1554117329
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1254.612 user 27.992 sys 1286.985 real
done: 1 calls 0.004 user 0.036 sys 0.045 real
exec_no_coor: 1 calls 0.012 user 0.006 sys 0.027 real
execute: 1 calls 0.004 user 0.001 sys 94.115 real
idle: 355 calls 0.130 user 0.001 sys 314.614 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 11683172352 mem 2602.044 user 32.017 sys 95.471 real