File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/732a1d986fb8386ae5a52bae753c15/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_27F-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_27F-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 7.1s, est remaining 134.5s, peak mem 5575MB, user 152.1s, sys 4.5s, output queue size 146
progress 10% @chr2:84000001, elapsed 12.5s, est remaining 112.5s, peak mem 6925MB, user 330.6s, sys 8.5s, output queue size 166
progress 15% @chr2:211000001, elapsed 17.8s, est remaining 100.9s, peak mem 8834MB, user 501.4s, sys 16.5s, output queue size 161
progress 20% @chr3:174000001, elapsed 22.1s, est remaining 88.6s, peak mem 8997MB, user 629.7s, sys 17.8s, output queue size 283
progress 25% @chr4:124000001, elapsed 26.0s, est remaining 77.9s, peak mem 8997MB, user 752.0s, sys 19.4s, output queue size 302
progress 30% @chr5:100000001, elapsed 28.8s, est remaining 67.2s, peak mem 9198MB, user 831.8s, sys 20.0s, output queue size 464
progress 35% @chr6:91000001, elapsed 33.3s, est remaining 61.9s, peak mem 9198MB, user 953.4s, sys 21.0s, output queue size 625
progress 40% @chr7:41000001, elapsed 39.9s, est remaining 59.9s, peak mem 10518MB, user 1117.8s, sys 22.1s, output queue size 786
progress 45% @chr8:82000001, elapsed 45.8s, est remaining 56.0s, peak mem 10825MB, user 1325.1s, sys 24.0s, output queue size 212
progress 50% @chr9:21000001, elapsed 50.8s, est remaining 50.8s, peak mem 12815MB, user 1466.5s, sys 25.0s, output queue size 366
progress 55% @chr10:117000001, elapsed 57.1s, est remaining 46.7s, peak mem 15540MB, user 1636.3s, sys 26.3s, output queue size 485
progress 60% @chr12:1000001, elapsed 63.4s, est remaining 42.3s, peak mem 16356MB, user 1838.5s, sys 28.5s, output queue size 647
progress 65% @chr13:35000001, elapsed 69.0s, est remaining 37.2s, peak mem 16356MB, user 1998.0s, sys 29.4s, output queue size 809
progress 70% @chr14:85000001, elapsed 72.5s, est remaining 31.1s, peak mem 16356MB, user 2134.1s, sys 30.3s, output queue size 970
progress 75% @chr16:38000001, elapsed 79.6s, est remaining 26.5s, peak mem 16356MB, user 2321.0s, sys 31.5s, output queue size 1132
progress 80% @chr18:25000001, elapsed 89.7s, est remaining 22.4s, peak mem 16356MB, user 2567.8s, sys 32.8s, output queue size 1294
progress 85% @chr20:25000001, elapsed 99.8s, est remaining 17.6s, peak mem 17515MB, user 2851.4s, sys 34.4s, output queue size 1456
progress 90% @chrX:43000001, elapsed 106.5s, est remaining 11.8s, peak mem 17825MB, user 3080.0s, sys 35.8s, output queue size 1618
progress 95% @chrY:54000001, elapsed 109.6s, est remaining 5.8s, peak mem 18027MB, user 3182.3s, sys 36.5s, output queue size 1780
progress 100% @chr7:55000001, elapsed 372.7s, est remaining 0.0s, peak mem 20523MB, user 3694.2s, sys 42.8s, output queue size 5204
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 99749239266
reads: 2068464941
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1597.765 user 37.356 sys 1636.419 real
done: 1 calls 0.019 user 0.030 sys 0.052 real
exec_no_coor: 1 calls 0.007 user 0.034 sys 0.056 real
execute: 1 calls 0.005 user 0.004 sys 372.773 real
idle: 7878 calls 0.404 user 0.052 sys 7847.807 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 21520936960 mem 3695.474 user 43.394 sys 374.209 real