File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/b8ec5ec2257e3b12a4628d0cbf7584/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_85O-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_85O-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 2.8s, est remaining 53.8s, peak mem 2271MB, user 66.7s, sys 2.1s, output queue size 44
progress 10% @chr2:94000001, elapsed 5.6s, est remaining 50.3s, peak mem 3078MB, user 150.8s, sys 3.6s, output queue size 117
progress 15% @chr2:232000001, elapsed 8.0s, est remaining 45.5s, peak mem 3850MB, user 226.5s, sys 6.0s, output queue size 122
progress 20% @chr3:176000001, elapsed 10.1s, est remaining 40.3s, peak mem 3898MB, user 288.1s, sys 7.0s, output queue size 174
progress 25% @chr4:135000001, elapsed 11.9s, est remaining 35.8s, peak mem 3954MB, user 346.1s, sys 7.6s, output queue size 302
progress 30% @chr5:35000001, elapsed 13.4s, est remaining 31.4s, peak mem 4017MB, user 391.0s, sys 8.1s, output queue size 464
progress 35% @chr6:86000001, elapsed 16.0s, est remaining 29.8s, peak mem 4376MB, user 457.6s, sys 8.9s, output queue size 625
progress 40% @chr7:66000001, elapsed 18.5s, est remaining 27.8s, peak mem 5039MB, user 521.2s, sys 9.6s, output queue size 786
progress 45% @chr8:31000001, elapsed 21.3s, est remaining 26.1s, peak mem 5039MB, user 611.6s, sys 10.4s, output queue size 359
progress 50% @chr9:76000001, elapsed 23.5s, est remaining 23.5s, peak mem 5182MB, user 675.5s, sys 11.2s, output queue size 520
progress 55% @chr10:109000001, elapsed 25.9s, est remaining 21.2s, peak mem 5182MB, user 765.3s, sys 12.0s, output queue size 348
progress 60% @chr12:5000001, elapsed 28.2s, est remaining 18.8s, peak mem 5182MB, user 836.2s, sys 12.7s, output queue size 510
progress 65% @chr12:113000001, elapsed 30.6s, est remaining 16.5s, peak mem 5182MB, user 902.8s, sys 13.1s, output queue size 672
progress 70% @chr14:78000001, elapsed 32.2s, est remaining 13.8s, peak mem 5182MB, user 949.1s, sys 13.6s, output queue size 833
progress 75% @chr16:41000001, elapsed 34.7s, est remaining 11.6s, peak mem 5182MB, user 1032.5s, sys 14.2s, output queue size 461
progress 80% @chr18:13000001, elapsed 38.1s, est remaining 9.5s, peak mem 5182MB, user 1125.9s, sys 14.9s, output queue size 623
progress 85% @chr20:20000001, elapsed 41.1s, est remaining 7.2s, peak mem 5182MB, user 1215.5s, sys 15.6s, output queue size 785
progress 90% @chrX:31000001, elapsed 43.0s, est remaining 4.8s, peak mem 5182MB, user 1296.7s, sys 16.3s, output queue size 513
progress 95% @chrY:51000001, elapsed 44.2s, est remaining 2.3s, peak mem 5182MB, user 1326.4s, sys 16.6s, output queue size 675
progress 100% @chr15:88000001, elapsed 48.1s, est remaining 0.0s, peak mem 5182MB, user 1382.7s, sys 17.1s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 45044196667
reads: 870183887
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 702.742 user 14.685 sys 716.732 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.018 sys 0.030 real
execute: 1 calls 0.006 user 0.002 sys 48.155 real
idle: 164 calls 0.145 user 0.001 sys 122.334 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5434527744 mem 1383.602 user 17.369 sys 49.439 real