File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/1de3a175c70ab62d702a8be572bb1f/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 44078258
total bases: 6655816958
Q20 bases: 6459473971(97.0501%)
Q30 bases: 6196309698(93.0962%)
Q40 bases: 6196309698(93.0962%)

Read2 before filtering:
total reads: 44078258
total bases: 6655816958
Q20 bases: 6475833625(97.2958%)
Q30 bases: 6175824338(92.7884%)
Q40 bases: 6175824338(92.7884%)

Read1 after filtering:
total reads: 43752775
total bases: 5707900210
Q20 bases: 5623202803(98.5161%)
Q30 bases: 5435636971(95.2301%)
Q40 bases: 5435636971(95.2301%)

Read2 after filtering:
total reads: 43752775
total bases: 5709316050
Q20 bases: 5616514654(98.3746%)
Q30 bases: 5419880824(94.9305%)
Q40 bases: 5419880824(94.9305%)

Filtering result:
reads passed filter: 87505550
reads failed due to low quality: 642180
reads failed due to too many N: 6376
reads failed due to too short: 2410
reads with adapter trimmed: 45240704
bases trimmed due to adapters: 1801916129

Duplication rate: 8.85608%

Insert size peak (evaluated by paired-end reads): 114

JSON report: 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L003_R1_001.fastq.gz --in2 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L003_R2_001.fastq.gz --out1 1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 479 seconds