File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/33bec4ddef25d3daf2345872cf92f8/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (659_bgw-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/38cea1e93e8b59bf2971a46d890882/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/92a765a8230f30dc116ffec87aa8b1/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/50524d5cdb40b8cae02497744aefbe/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/d96695df5867a0502ae48dae41328f/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/33bec4ddef25d3daf2345872cf92f8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/965b85bdcd8239d69a06b94bc68aac/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/5b31daf6c489db31599c7371338a72/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/4cae29cbeba610edaf7a4f87ba4d42/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/33bec4ddef25d3daf2345872cf92f8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/1ca047be0b8b0dbdfe811c1e97b15e/659_bgw-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory