cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 13.3s, est remaining 252.2s, peak mem 6930MB, user 360.7s, sys 7.3s, output queue size 169
progress 10% @chr2:23798138, elapsed 24.6s, est remaining 221.2s, peak mem 8364MB, user 671.3s, sys 10.5s, output queue size 1152
progress 15% @chr2:185788643, elapsed 37.9s, est remaining 214.8s, peak mem 9712MB, user 1038.9s, sys 14.2s, output queue size 284
progress 20% @chr3:63999450, elapsed 52.0s, est remaining 208.0s, peak mem 9777MB, user 1432.3s, sys 17.1s, output queue size 686
progress 25% @chr4:87661962, elapsed 62.7s, est remaining 188.1s, peak mem 9777MB, user 1725.2s, sys 19.1s, output queue size 94
progress 30% @chr5:147405610, elapsed 71.8s, est remaining 167.6s, peak mem 9790MB, user 1968.0s, sys 20.8s, output queue size 207
progress 35% @chr6:131700469, elapsed 86.5s, est remaining 160.6s, peak mem 10676MB, user 2372.3s, sys 23.9s, output queue size 637
progress 40% @chr7:102248412, elapsed 100.7s, est remaining 151.1s, peak mem 11098MB, user 2762.2s, sys 26.8s, output queue size 1449
progress 45% @chr9:990041, elapsed 115.9s, est remaining 141.6s, peak mem 11401MB, user 3187.6s, sys 30.0s, output queue size 149
progress 50% @chr10:32925871, elapsed 129.5s, est remaining 129.5s, peak mem 11602MB, user 3566.5s, sys 32.7s, output queue size 108
progress 55% @chr11:48306223, elapsed 141.1s, est remaining 115.5s, peak mem 11602MB, user 3884.8s, sys 34.5s, output queue size 15
progress 60% @chr12:11777279, elapsed 155.4s, est remaining 103.6s, peak mem 11602MB, user 4277.4s, sys 37.1s, output queue size 825
progress 65% @chr13:49488290, elapsed 168.5s, est remaining 90.7s, peak mem 11602MB, user 4644.3s, sys 39.9s, output queue size 571
progress 70% @chr15:42745795, elapsed 180.9s, est remaining 77.5s, peak mem 11602MB, user 4988.1s, sys 42.1s, output queue size 457
progress 75% @chr16:30949290, elapsed 195.6s, est remaining 65.2s, peak mem 11602MB, user 5402.2s, sys 44.9s, output queue size 28
progress 80% @chr17:42698618, elapsed 211.9s, est remaining 53.0s, peak mem 11602MB, user 5863.6s, sys 48.2s, output queue size 704
progress 85% @chr19:5693298, elapsed 225.6s, est remaining 39.8s, peak mem 11602MB, user 6243.6s, sys 50.7s, output queue size 408
progress 90% @chr19:52225717, elapsed 239.3s, est remaining 26.6s, peak mem 11602MB, user 6628.7s, sys 53.4s, output queue size 797
progress 95% @chr22:36505896, elapsed 253.7s, est remaining 13.4s, peak mem 11982MB, user 7035.7s, sys 56.2s, output queue size 28
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 266.7s, est remaining 0.0s, peak mem 12103MB, user 7398.2s, sys 58.7s, output queue size 1
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 99271553910
reads: 1941527573
contig: 201779 intervals 37922265 bases
advance: 208647 calls 3982.570 user 51.370 sys 4151.873 real
done: 1 calls 0.408 user 0.382 sys 0.793 real
execute: 1 calls 0.000 user 0.014 sys 266.722 real
fetch_reads: 208647 calls 418.634 user 0.642 sys 425.384 real
fetch_ref: 207153 calls 0.813 user 0.840 sys 1.832 real
fetch_vcf: 207153 calls 81.038 user 2.243 sys 85.049 real
idle: 98 calls 0.140 user 0.000 sys 32.834 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 602184 calls 3345.149 user 2.150 sys 3415.085 real
overall: 12691767296 mem 8082.755 user 60.126 sys 268.491 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory