cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1047_JG-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 16.4s, est remaining 311.7s, peak mem 8819MB, user 469.2s, sys 9.5s, output queue size 170
progress 10% @chr2:21029898, elapsed 31.1s, est remaining 279.9s, peak mem 10806MB, user 900.4s, sys 13.7s, output queue size 654
progress 15% @chr2:189845650, elapsed 49.8s, est remaining 281.9s, peak mem 12915MB, user 1453.7s, sys 18.5s, output queue size 284
progress 20% @chr3:63999450, elapsed 67.9s, est remaining 271.5s, peak mem 13862MB, user 1986.7s, sys 22.7s, output queue size 680
progress 25% @chr4:88462135, elapsed 83.1s, est remaining 249.2s, peak mem 13862MB, user 2440.4s, sys 25.5s, output queue size 85
progress 30% @chr5:146514854, elapsed 97.2s, est remaining 226.8s, peak mem 14323MB, user 2855.8s, sys 28.4s, output queue size 202
progress 35% @chr6:132323931, elapsed 115.6s, est remaining 214.7s, peak mem 14693MB, user 3395.4s, sys 32.3s, output queue size 636
progress 40% @chr7:116775713, elapsed 134.1s, est remaining 201.1s, peak mem 15115MB, user 3947.5s, sys 36.1s, output queue size 544
progress 45% @chr9:1991243, elapsed 153.5s, est remaining 187.6s, peak mem 15694MB, user 4526.6s, sys 40.3s, output queue size 16
progress 50% @chr10:33213386, elapsed 170.2s, est remaining 170.2s, peak mem 15694MB, user 5017.3s, sys 43.5s, output queue size 105
progress 55% @chr11:48136039, elapsed 185.0s, est remaining 151.4s, peak mem 15694MB, user 5450.0s, sys 46.0s, output queue size 10
progress 60% @chr12:25232559, elapsed 202.9s, est remaining 135.3s, peak mem 15797MB, user 5966.5s, sys 48.9s, output queue size 795
progress 65% @chr13:40559510, elapsed 219.4s, est remaining 118.1s, peak mem 15797MB, user 6464.2s, sys 52.5s, output queue size 560
progress 70% @chr15:43154672, elapsed 234.8s, est remaining 100.6s, peak mem 15797MB, user 6913.4s, sys 55.6s, output queue size 454
progress 75% @chr16:30953185, elapsed 251.0s, est remaining 83.7s, peak mem 15797MB, user 7388.6s, sys 58.4s, output queue size 32
progress 80% @chr17:42313325, elapsed 269.8s, est remaining 67.4s, peak mem 15797MB, user 7942.1s, sys 61.9s, output queue size 704
progress 85% @chr19:5693298, elapsed 285.8s, est remaining 50.4s, peak mem 15797MB, user 8415.6s, sys 64.8s, output queue size 405
progress 90% @chr19:55762598, elapsed 300.0s, est remaining 33.3s, peak mem 15797MB, user 8825.3s, sys 67.3s, output queue size 91
progress 95% @chr22:36490008, elapsed 315.5s, est remaining 16.6s, peak mem 15997MB, user 9282.6s, sys 69.9s, output queue size 22
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 330.6s, est remaining 0.0s, peak mem 16029MB, user 9729.0s, sys 72.9s, output queue size 1
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 140423331250
reads: 3098808471
contig: 201779 intervals 37922265 bases
advance: 208647 calls 5311.933 user 63.068 sys 5553.728 real
done: 1 calls 0.338 user 0.339 sys 0.685 real
execute: 1 calls 0.005 user 0.001 sys 330.643 real
fetch_reads: 208647 calls 588.893 user 0.991 sys 597.257 real
fetch_ref: 206980 calls 1.336 user 1.254 sys 2.511 real
fetch_vcf: 206980 calls 86.122 user 2.375 sys 89.486 real
idle: 107 calls 0.163 user 0.000 sys 32.990 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 776628 calls 3668.123 user 2.432 sys 3776.221 real
overall: 16808353792 mem 10017.280 user 74.210 sys 332.370 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory