cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_87O-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_87O-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_87O-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_87O-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 42.9s, est remaining 814.9s, peak mem 6046MB, user 1055.7s, sys 9.3s, output queue size 52
progress 10% @chr2:79000001, elapsed 75.9s, est remaining 682.8s, peak mem 8011MB, user 2105.2s, sys 13.1s, output queue size 117
progress 15% @chr2:197000001, elapsed 107.7s, est remaining 610.1s, peak mem 8563MB, user 3097.6s, sys 17.5s, output queue size 122
progress 20% @chr3:154000001, elapsed 139.4s, est remaining 557.7s, peak mem 8785MB, user 4028.2s, sys 20.8s, output queue size 141
progress 25% @chr4:129000001, elapsed 164.2s, est remaining 492.6s, peak mem 8880MB, user 4767.2s, sys 23.2s, output queue size 302
progress 30% @chr5:107000001, elapsed 182.9s, est remaining 426.7s, peak mem 8980MB, user 5342.1s, sys 25.3s, output queue size 464
progress 35% @chr6:52000001, elapsed 208.6s, est remaining 387.4s, peak mem 9217MB, user 6136.8s, sys 28.0s, output queue size 106
progress 40% @chr7:67000001, elapsed 237.3s, est remaining 356.0s, peak mem 9443MB, user 6986.9s, sys 30.9s, output queue size 195
progress 45% @chr8:58000001, elapsed 268.6s, est remaining 328.3s, peak mem 9617MB, user 7888.0s, sys 33.9s, output queue size 204
progress 50% @chr9:89000001, elapsed 293.5s, est remaining 293.5s, peak mem 9700MB, user 8602.7s, sys 36.0s, output queue size 324
progress 55% @chr10:93000001, elapsed 324.4s, est remaining 265.5s, peak mem 10004MB, user 9606.9s, sys 39.0s, output queue size 348
progress 60% @chr12:1000001, elapsed 358.8s, est remaining 239.2s, peak mem 10004MB, user 10550.0s, sys 41.8s, output queue size 510
progress 65% @chr13:19000001, elapsed 385.4s, est remaining 207.5s, peak mem 10004MB, user 11416.2s, sys 44.6s, output queue size 474
progress 70% @chr14:78000001, elapsed 403.7s, est remaining 173.0s, peak mem 10012MB, user 12041.7s, sys 46.8s, output queue size 299
progress 75% @chr16:42000001, elapsed 435.6s, est remaining 145.2s, peak mem 10076MB, user 12898.8s, sys 49.6s, output queue size 461
progress 80% @chr17:58000001, elapsed 483.3s, est remaining 120.8s, peak mem 10227MB, user 14294.4s, sys 53.8s, output queue size 190
progress 85% @chr19:52000001, elapsed 525.7s, est remaining 92.8s, peak mem 10227MB, user 15680.6s, sys 58.0s, output queue size 351
progress 90% @chrX:23000001, elapsed 556.0s, est remaining 61.8s, peak mem 10327MB, user 16558.5s, sys 60.6s, output queue size 513
progress 95% @chrY:53000001, elapsed 577.7s, est remaining 30.4s, peak mem 10386MB, user 17173.0s, sys 62.6s, output queue size 675
progress 100% @chrX:67000001, elapsed 617.1s, est remaining 0.0s, peak mem 10386MB, user 17924.0s, sys 64.9s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 64662667717
output file size: 98420335572
reads: 1297852227
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.017 real
ReadQualCal::delayed_init: 1 calls 0.002 user 0.001 sys 0.024 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.007 real
advance: 3219322 calls 1607.312 user 21.534 sys 1662.605 real
done: 1 calls 0.465 user 0.482 sys 0.949 real
exec_no_coor: 1 calls 0.011 user 0.017 sys 0.061 real
execute: 1 calls 0.005 user 0.000 sys 618.498 real
fetch: 3219323 calls 93.943 user 0.535 sys 138.699 real
fetch_reads: 3219322 calls 317.799 user 0.870 sys 323.057 real
fetch_ref: 1988173 calls 7.034 user 1.402 sys 8.437 real
fetch_vcf: 1988173 calls 106.655 user 1.542 sys 111.396 real
idle: 53864 calls 15.419 user 0.286 sys 909.119 real
init: 1 calls 0.007 user 0.001 sys 0.031 real
update: 2356440 calls 4046.055 user 3.068 sys 4185.704 real
write: 3219323 calls 13448.241 user 31.694 sys 13609.817 real
overall: 10891317248 mem 17953.861 user 105.592 sys 620.920 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_87O-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_87O-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_87O-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.050 user 0.000 sys 0.040 real
done: 1 calls 0.070 user 0.010 sys 0.079 real
idle: 61 calls 0.002 user 0.000 sys 31.333 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86753280 mem 0.095 user 0.035 sys 1.058 real