File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/6506e543b55405b6a96858288f913f/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 1.9s, est remaining 35.3s, peak mem 947MB, user 47.6s, sys 1.0s, output queue size 42
progress 10% @chr2:68000001, elapsed 3.3s, est remaining 29.8s, peak mem 1442MB, user 93.4s, sys 1.6s, output queue size 70
progress 15% @chr3:1000001, elapsed 5.0s, est remaining 28.1s, peak mem 1681MB, user 144.0s, sys 2.6s, output queue size 57
progress 20% @chr3:154000001, elapsed 6.5s, est remaining 26.2s, peak mem 1681MB, user 190.5s, sys 3.4s, output queue size 141
progress 25% @chr4:118000001, elapsed 7.9s, est remaining 23.8s, peak mem 1681MB, user 233.6s, sys 3.9s, output queue size 302
progress 30% @chr5:78000001, elapsed 9.1s, est remaining 21.1s, peak mem 1681MB, user 272.4s, sys 4.4s, output queue size 19
progress 35% @chr6:76000001, elapsed 10.7s, est remaining 19.8s, peak mem 1834MB, user 314.6s, sys 4.8s, output queue size 70
progress 40% @chr7:71000001, elapsed 12.2s, est remaining 18.3s, peak mem 1941MB, user 364.5s, sys 5.3s, output queue size 194
progress 45% @chr8:71000001, elapsed 13.8s, est remaining 16.9s, peak mem 1996MB, user 413.3s, sys 5.7s, output queue size 204
progress 50% @chr9:88000001, elapsed 15.2s, est remaining 15.2s, peak mem 1996MB, user 452.8s, sys 6.1s, output queue size 187
progress 55% @chr10:111000001, elapsed 16.8s, est remaining 13.8s, peak mem 2004MB, user 502.0s, sys 6.4s, output queue size 348
progress 60% @chr11:129000001, elapsed 18.4s, est remaining 12.3s, peak mem 2004MB, user 556.4s, sys 6.9s, output queue size 59
progress 65% @chr13:30000001, elapsed 20.0s, est remaining 10.8s, peak mem 2028MB, user 603.1s, sys 7.3s, output queue size 138
progress 70% @chr14:69000001, elapsed 21.2s, est remaining 9.1s, peak mem 2049MB, user 641.5s, sys 7.7s, output queue size 299
progress 75% @chr16:42000001, elapsed 22.8s, est remaining 7.6s, peak mem 2145MB, user 682.2s, sys 8.1s, output queue size 461
progress 80% @chr18:2000001, elapsed 25.1s, est remaining 6.3s, peak mem 2147MB, user 752.4s, sys 8.9s, output queue size 86
progress 85% @chr20:21000001, elapsed 27.1s, est remaining 4.8s, peak mem 2354MB, user 822.5s, sys 9.6s, output queue size 40
progress 90% @chrX:35000001, elapsed 28.5s, est remaining 3.2s, peak mem 2354MB, user 864.8s, sys 10.0s, output queue size 78
progress 95% @chrY:55000001, elapsed 29.6s, est remaining 1.6s, peak mem 2354MB, user 900.6s, sys 10.2s, output queue size 211
progress 100% @chr22:23000001, elapsed 30.3s, est remaining 0.0s, peak mem 2354MB, user 917.5s, sys 10.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34425376535
reads: 539909111
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 523.630 user 8.620 sys 531.330 real
done: 1 calls 0.023 user 0.007 sys 0.037 real
exec_no_coor: 1 calls 0.005 user 0.005 sys 0.018 real
execute: 1 calls 0.005 user 0.002 sys 30.263 real
idle: 76 calls 0.157 user 0.008 sys 39.630 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2469138432 mem 918.696 user 10.558 sys 31.482 real