File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/ed96efae63097063821da197353eb8/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.4s, est remaining 84.0s, peak mem 2710MB, user 99.1s, sys 2.1s, output queue size 150
progress 10% @chr2:90000001, elapsed 8.3s, est remaining 74.8s, peak mem 3770MB, user 233.3s, sys 3.7s, output queue size 48
progress 15% @chr3:4000001, elapsed 13.6s, est remaining 77.2s, peak mem 5527MB, user 386.4s, sys 5.9s, output queue size 122
progress 20% @chr3:176000001, elapsed 17.1s, est remaining 68.2s, peak mem 5574MB, user 491.5s, sys 6.6s, output queue size 283
progress 25% @chr4:132000001, elapsed 19.9s, est remaining 59.8s, peak mem 5658MB, user 579.0s, sys 7.2s, output queue size 444
progress 30% @chr5:104000001, elapsed 22.2s, est remaining 51.8s, peak mem 5658MB, user 650.6s, sys 7.7s, output queue size 606
progress 35% @chr6:82000001, elapsed 26.3s, est remaining 48.9s, peak mem 6230MB, user 752.6s, sys 8.4s, output queue size 767
progress 40% @chr7:64000001, elapsed 31.1s, est remaining 46.6s, peak mem 7441MB, user 875.9s, sys 9.4s, output queue size 928
progress 45% @chr8:78000001, elapsed 37.4s, est remaining 45.8s, peak mem 7924MB, user 1074.7s, sys 10.8s, output queue size 347
progress 50% @chr9:89000001, elapsed 41.5s, est remaining 41.5s, peak mem 8041MB, user 1207.9s, sys 11.9s, output queue size 507
progress 55% @chr10:118000001, elapsed 46.0s, est remaining 37.6s, peak mem 8973MB, user 1330.3s, sys 12.7s, output queue size 668
progress 60% @chr11:134000001, elapsed 51.3s, est remaining 34.2s, peak mem 11882MB, user 1480.4s, sys 13.3s, output queue size 830
progress 65% @chr13:31000001, elapsed 56.1s, est remaining 30.2s, peak mem 12346MB, user 1637.9s, sys 14.0s, output queue size 992
progress 70% @chr14:69000001, elapsed 60.0s, est remaining 25.7s, peak mem 13639MB, user 1781.3s, sys 15.1s, output queue size 970
progress 75% @chr16:42000001, elapsed 65.2s, est remaining 21.7s, peak mem 13917MB, user 1915.6s, sys 15.8s, output queue size 1132
progress 80% @chr18:13000001, elapsed 72.2s, est remaining 18.0s, peak mem 13951MB, user 2123.7s, sys 16.9s, output queue size 1294
progress 85% @chr20:9000001, elapsed 78.9s, est remaining 13.9s, peak mem 14016MB, user 2340.5s, sys 18.0s, output queue size 1456
progress 90% @chrX:30000001, elapsed 83.2s, est remaining 9.2s, peak mem 14020MB, user 2483.5s, sys 18.6s, output queue size 1618
progress 95% @chrY:51000001, elapsed 85.7s, est remaining 4.5s, peak mem 14020MB, user 2557.0s, sys 19.0s, output queue size 1780
progress 100% @chr7:55000001, elapsed 556.5s, est remaining 0.0s, peak mem 19731MB, user 3124.7s, sys 31.6s, output queue size 5204
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 71921241447
reads: 1527741288
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1183.899 user 24.722 sys 1211.056 real
done: 1 calls 0.306 user 0.019 sys 0.325 real
exec_no_coor: 1 calls 0.000 user 0.037 sys 0.074 real
execute: 1 calls 0.002 user 0.001 sys 556.883 real
idle: 14173 calls 0.516 user 0.055 sys 14141.051 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 20689838080 mem 3127.128 user 32.309 sys 558.979 real