File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/a65b1215116f9bada7ef920c71bef6/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_87O-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_87O-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 4.3s, est remaining 82.4s, peak mem 3384MB, user 98.9s, sys 2.7s, output queue size 146
progress 10% @chr2:94000001, elapsed 7.7s, est remaining 69.5s, peak mem 4360MB, user 205.7s, sys 4.2s, output queue size 166
progress 15% @chr3:8000001, elapsed 11.3s, est remaining 64.1s, peak mem 5991MB, user 318.5s, sys 8.0s, output queue size 203
progress 20% @chr3:174000001, elapsed 14.5s, est remaining 58.1s, peak mem 6199MB, user 405.8s, sys 10.5s, output queue size 283
progress 25% @chr4:129000001, elapsed 17.1s, est remaining 51.2s, peak mem 6251MB, user 494.1s, sys 12.1s, output queue size 302
progress 30% @chr5:100000001, elapsed 19.0s, est remaining 44.4s, peak mem 6251MB, user 545.7s, sys 12.6s, output queue size 464
progress 35% @chr6:90000001, elapsed 22.1s, est remaining 41.0s, peak mem 6251MB, user 625.3s, sys 13.5s, output queue size 625
progress 40% @chr7:47000001, elapsed 25.6s, est remaining 38.4s, peak mem 6251MB, user 728.2s, sys 14.7s, output queue size 786
progress 45% @chr8:58000001, elapsed 29.2s, est remaining 35.7s, peak mem 6252MB, user 858.4s, sys 15.6s, output queue size 204
progress 50% @chr9:102000001, elapsed 32.3s, est remaining 32.3s, peak mem 6539MB, user 936.3s, sys 16.3s, output queue size 366
progress 55% @chr10:104000001, elapsed 36.1s, est remaining 29.5s, peak mem 7057MB, user 1048.6s, sys 17.3s, output queue size 485
progress 60% @chr12:5000001, elapsed 40.1s, est remaining 26.7s, peak mem 7057MB, user 1179.2s, sys 18.2s, output queue size 510
progress 65% @chr13:35000001, elapsed 43.6s, est remaining 23.5s, peak mem 7060MB, user 1266.2s, sys 18.9s, output queue size 672
progress 70% @chr14:79000001, elapsed 45.9s, est remaining 19.7s, peak mem 7062MB, user 1342.5s, sys 19.5s, output queue size 833
progress 75% @chr16:41000001, elapsed 50.2s, est remaining 16.7s, peak mem 7062MB, user 1490.5s, sys 20.7s, output queue size 461
progress 80% @chr18:1, elapsed 56.2s, est remaining 14.0s, peak mem 7162MB, user 1652.7s, sys 21.7s, output queue size 623
progress 85% @chr19:15000001, elapsed 62.1s, est remaining 11.0s, peak mem 7162MB, user 1832.8s, sys 22.7s, output queue size 785
progress 90% @chrX:30000001, elapsed 66.0s, est remaining 7.3s, peak mem 7218MB, user 1964.9s, sys 23.6s, output queue size 513
progress 95% @chrY:53000001, elapsed 68.9s, est remaining 3.6s, peak mem 7388MB, user 2043.8s, sys 24.3s, output queue size 675
progress 100% @chr15:88000001, elapsed 80.6s, est remaining 0.0s, peak mem 7391MB, user 2181.3s, sys 25.2s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 64662667717
reads: 1297852227
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1018.328 user 21.858 sys 1038.549 real
done: 1 calls 0.000 user 0.039 sys 0.046 real
exec_no_coor: 1 calls 0.000 user 0.017 sys 0.032 real
execute: 1 calls 0.002 user 0.001 sys 80.648 real
idle: 354 calls 0.167 user 0.001 sys 324.481 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7755403264 mem 2182.240 user 25.395 sys 81.963 real