.command.sh - Workdir - DAQ:SAMTOOLS_IDXSTATS_COUNT (1029_IWL-T1-TDNA-1_A23MHWWLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/7c39d4a15121cf09312ab69eb5b4c0/.command.sh
Size: 312 bytes
Task: DAQ:SAMTOOLS_IDXSTATS_COUNT (1029_IWL-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bai_mapped_count.py 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam.bai > 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.mapped_count.txt

cat <<-END_VERSIONS > versions.yml
"DAQ:SAMTOOLS_IDXSTATS_COUNT":
    python: $(python3 --version | sed 's/Python //')
    bai_mapped_count: 1.0.0
END_VERSIONS