File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/eb68b5b923d115c730f209fa3bb16f/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_253-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_253-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:154000001, elapsed 4.6s, est remaining 86.7s, peak mem 3616MB, user 104.3s, sys 3.2s, output queue size 145
progress 10% @chr1:243000001, elapsed 8.5s, est remaining 76.1s, peak mem 4833MB, user 221.0s, sys 6.5s, output queue size 166
progress 15% @chr2:74000001, elapsed 12.1s, est remaining 68.3s, peak mem 7054MB, user 338.6s, sys 9.0s, output queue size 203
progress 20% @chr3:174000001, elapsed 15.2s, est remaining 60.8s, peak mem 7345MB, user 431.7s, sys 11.0s, output queue size 283
progress 25% @chr4:129000001, elapsed 17.9s, est remaining 53.7s, peak mem 7345MB, user 519.0s, sys 12.0s, output queue size 302
progress 30% @chr5:106000001, elapsed 20.1s, est remaining 47.0s, peak mem 7345MB, user 578.6s, sys 12.6s, output queue size 464
progress 35% @chr6:70000001, elapsed 23.4s, est remaining 43.5s, peak mem 7345MB, user 672.5s, sys 13.8s, output queue size 625
progress 40% @chr7:65000001, elapsed 26.8s, est remaining 40.2s, peak mem 7345MB, user 777.2s, sys 14.8s, output queue size 197
progress 45% @chr8:78000001, elapsed 30.4s, est remaining 37.1s, peak mem 7345MB, user 884.0s, sys 15.8s, output queue size 356
progress 50% @chr9:102000001, elapsed 33.7s, est remaining 33.7s, peak mem 7501MB, user 973.3s, sys 16.7s, output queue size 366
progress 55% @chr10:99000001, elapsed 37.3s, est remaining 30.5s, peak mem 7590MB, user 1095.7s, sys 17.8s, output queue size 348
progress 60% @chr12:1000001, elapsed 41.1s, est remaining 27.4s, peak mem 7590MB, user 1201.6s, sys 18.7s, output queue size 510
progress 65% @chr12:123000001, elapsed 44.7s, est remaining 24.1s, peak mem 7744MB, user 1319.0s, sys 19.8s, output queue size 474
progress 70% @chr13:102000001, elapsed 46.9s, est remaining 20.1s, peak mem 7872MB, user 1388.9s, sys 20.5s, output queue size 635
progress 75% @chr16:41000001, elapsed 51.0s, est remaining 17.0s, peak mem 7873MB, user 1513.2s, sys 21.5s, output queue size 461
progress 80% @chr18:10000001, elapsed 57.0s, est remaining 14.2s, peak mem 7947MB, user 1673.7s, sys 22.8s, output queue size 623
progress 85% @chr19:45000001, elapsed 62.1s, est remaining 11.0s, peak mem 7947MB, user 1841.4s, sys 24.1s, output queue size 785
progress 90% @chrX:30000001, elapsed 65.4s, est remaining 7.3s, peak mem 7947MB, user 1955.3s, sys 25.0s, output queue size 513
progress 95% @chrY:54000001, elapsed 67.4s, est remaining 3.5s, peak mem 7947MB, user 2011.4s, sys 25.5s, output queue size 675
progress 100% @chr15:88000001, elapsed 74.8s, est remaining 0.0s, peak mem 7947MB, user 2114.0s, sys 26.3s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 71204379079
reads: 1300983781
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1082.755 user 23.243 sys 1106.077 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.005 user 0.005 sys 0.016 real
execute: 1 calls 0.005 user 0.002 sys 74.819 real
idle: 231 calls 0.102 user 0.001 sys 208.064 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8333369344 mem 2114.958 user 26.682 sys 76.256 real