Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/e6171b47df25da081865b24d406cee/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/a448c4993795e870a5cd9b9a1c3170/1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/BWAIndex Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/e6171b47df25da081865b24d406cee/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/a448c4993795e870a5cd9b9a1c3170/1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz ==> STAGING COMPLETE (7 inputs) This software is licensed to bgold@natera.com by Sentieon Inc. cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/util sort -r Homo_sapiens_assembly38.fasta -t 31 -o 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.bam --sam2bam - This software is licensed to bgold@natera.com by Sentieon Inc. version: sentieon-genomics-202308.03 [M::bwa_idx_load_from_disk] read 3171 ALT contigs [M::main_mem] bwa index loaded in 1853.946 CPU sec, 67.420 real sec [M::process] read 771304 sequences (100000192 bp) in 1.104 CPU sec, 1.121 real sec... [M::process] read 769066 sequences (100000213 bp) in 1.472 CPU sec, 1.556 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 304944, 6, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (152, 360, 850) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2246) [M::mem_pestat] mean and std.dev: (417.58, 348.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2944) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 147, 198) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 374) [M::mem_pestat] mean and std.dev: (158.75, 64.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 462) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (135, 175, 463) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1119) [M::mem_pestat] mean and std.dev: (246.93, 157.07) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1447) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 767658 sequences (100000273 bp) in 1.605 CPU sec, 1.714 real sec... [M::process] read 767236 sequences (100000159 bp) in 1.539 CPU sec, 1.604 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 304405, 6, 29) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (139, 225, 360) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 802) [M::mem_pestat] mean and std.dev: (226.35, 115.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1023) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.63, 66.63) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (151, 255, 1329) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3685) [M::mem_pestat] mean and std.dev: (490.16, 492.25) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4863) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 771304 reads in 207.359 CPU sec, 6.791 real sec [M::mem_process_seqs] Processed 769066 reads in 138.162 CPU sec, 4.536 real sec sorting block 0, #reads = 1113894 mem = 536884261 peak = 582172672 [M::process] read 766166 sequences (100000066 bp) in 2.133 CPU sec, 2.214 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 303700, 7, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (195, 345, 556) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1278) [M::mem_pestat] mean and std.dev: (377.27, 271.21) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1639) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 387) [M::mem_pestat] mean and std.dev: (161.83, 67.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 479) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (195, 233, 783) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1959) [M::mem_pestat] mean and std.dev: (431.00, 390.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2547) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 766280 sequences (100000098 bp) in 1.620 CPU sec, 1.615 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 304023, 11, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (147, 250, 792) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2082) [M::mem_pestat] mean and std.dev: (311.56, 246.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2727) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (161.95, 67.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (243, 540, 1069) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2721) [M::mem_pestat] mean and std.dev: (528.44, 392.11) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3547) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (134, 145, 286) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 590) [M::mem_pestat] mean and std.dev: (165.46, 67.04) [M::mem_pestat] low and high boundaries for proper pairs: (1, 742) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 767658 reads in 203.325 CPU sec, 6.505 real sec sorting block 1, #reads = 1110160 mem = 536882447 peak = 766197760 [M::mem_process_seqs] Processed 767236 reads in 233.276 CPU sec, 7.499 real sec [M::process] read 764688 sequences (100000200 bp) in 2.015 CPU sec, 2.086 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 303002, 10, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (109, 187, 594) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1564) [M::mem_pestat] mean and std.dev: (449.74, 496.88) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2437) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.62, 67.97) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (95, 160, 327) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 791) [M::mem_pestat] mean and std.dev: (213.00, 178.56) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1023) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (171, 194, 1307) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3579) [M::mem_pestat] mean and std.dev: (494.85, 494.82) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4715) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 764574 sequences (100000199 bp) in 1.735 CPU sec, 1.756 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 302784, 9, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (159, 286, 2072) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5898) [M::mem_pestat] mean and std.dev: (764.55, 858.80) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7811) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 205) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 391) [M::mem_pestat] mean and std.dev: (163.71, 68.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 484) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (165, 240, 1443) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3999) [M::mem_pestat] mean and std.dev: (674.86, 695.92) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5277) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 303937, 11, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (192, 236, 743) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1845) [M::mem_pestat] mean and std.dev: (337.07, 257.79) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2396) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.60, 68.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (547, 614, 628) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (385, 790) [M::mem_pestat] mean and std.dev: (598.67, 36.87) [M::mem_pestat] low and high boundaries for proper pairs: (304, 871) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (153, 190, 1086) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2952) [M::mem_pestat] mean and std.dev: (370.27, 404.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3885) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 766166 reads in 292.737 CPU sec, 9.525 real sec sorting block 2, #reads = 1111030 mem = 536888367 peak = 795402240 [M::mem_process_seqs] Processed 764688 reads in 227.130 CPU sec, 7.474 real sec [M::mem_process_seqs] Processed 766280 reads in 246.185 CPU sec, 8.102 real sec sorting block 3, #reads = 1108952 mem = 536875680 peak = 804122624 [M::process] read 763122 sequences (100000156 bp) in 2.538 CPU sec, 2.656 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 302801, 6, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (140, 222, 931) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2513) [M::mem_pestat] mean and std.dev: (529.50, 550.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3304) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 151, 205) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 391) [M::mem_pestat] mean and std.dev: (163.65, 68.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 484) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (451, 805, 1647) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4039) [M::mem_pestat] mean and std.dev: (1079.82, 979.64) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5235) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 762384 sequences (100000027 bp) in 2.377 CPU sec, 2.440 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 301915, 12, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (99, 152, 227) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 483) [M::mem_pestat] mean and std.dev: (144.73, 44.43) [M::mem_pestat] low and high boundaries for proper pairs: (1, 611) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392) [M::mem_pestat] mean and std.dev: (164.47, 69.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 485) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (126, 335, 825) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2223) [M::mem_pestat] mean and std.dev: (419.58, 399.71) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2922) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (228, 432, 639) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1461) [M::mem_pestat] mean and std.dev: (406.19, 237.56) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1872) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 764574 reads in 204.149 CPU sec, 6.494 real sec [M::process] read 762536 sequences (100000143 bp) in 1.830 CPU sec, 1.835 real sec... sorting block 4, #reads = 1110685 mem = 536877081 peak = 804122624 [M::mem_process_seqs] Processed 763122 reads in 135.130 CPU sec, 4.279 real sec sorting block 5, #reads = 1107922 mem = 536881923 peak = 879001600 [M::process] read 763730 sequences (100000195 bp) in 2.347 CPU sec, 2.741 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 302103, 2, 29) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (147, 170, 463) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1095) [M::mem_pestat] mean and std.dev: (284.80, 268.42) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1411) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (165.35, 69.56) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (130, 161, 594) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1522) [M::mem_pestat] mean and std.dev: (280.63, 243.50) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1986) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 762936 sequences (100000024 bp) in 1.918 CPU sec, 1.927 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 302055, 11, 23) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (374, 561, 887) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1913) [M::mem_pestat] mean and std.dev: (477.12, 242.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2426) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (165.17, 69.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (733, 749, 1662) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3520) [M::mem_pestat] mean and std.dev: (1028.82, 597.29) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4449) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (206, 350, 706) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1706) [M::mem_pestat] mean and std.dev: (339.74, 213.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2206) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 762384 reads in 193.456 CPU sec, 6.143 real sec [M::mem_process_seqs] Processed 762536 reads in 130.861 CPU sec, 4.174 real sec sorting block 6, #reads = 1108002 mem = 536884808 peak = 879001600 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 302628, 6, 22) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (150, 352, 1785) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5055) [M::mem_pestat] mean and std.dev: (813.08, 968.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6690) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392) [M::mem_pestat] mean and std.dev: (164.44, 68.93) [M::mem_pestat] low and high boundaries for proper pairs: (1, 485) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (184, 497, 1164) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3124) [M::mem_pestat] mean and std.dev: (651.85, 570.85) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4104) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 762430 sequences (100000230 bp) in 2.465 CPU sec, 2.578 real sec... [M::process] read 768884 sequences (100000177 bp) in 2.050 CPU sec, 2.050 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (28, 302489, 6, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (155, 373, 1337) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3701) [M::mem_pestat] mean and std.dev: (608.15, 647.48) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4883) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (164.84, 69.33) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (174, 290, 495) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1137) [M::mem_pestat] mean and std.dev: (267.85, 130.23) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1458) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 763730 reads in 200.181 CPU sec, 6.366 real sec sorting block 7, #reads = 1106921 mem = 536880245 peak = 879001600 [M::mem_process_seqs] Processed 762936 reads in 136.633 CPU sec, 4.360 real sec sorting block 8, #reads = 1105243 mem = 536885718 peak = 879001600 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 301952, 11, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (189, 240, 2069) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5829) [M::mem_pestat] mean and std.dev: (688.17, 999.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7709) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 208) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 398) [M::mem_pestat] mean and std.dev: (165.69, 70.21) [M::mem_pestat] low and high boundaries for proper pairs: (1, 493) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (161, 173, 2349) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6725) [M::mem_pestat] mean and std.dev: (1179.73, 1413.90) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8913) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (135, 271, 657) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1701) [M::mem_pestat] mean and std.dev: (390.69, 340.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2223) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 768960 sequences (100000254 bp) in 2.871 CPU sec, 2.976 real sec... [M::process] read 767868 sequences (100000179 bp) in 1.767 CPU sec, 1.764 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 303836, 6, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (143, 201, 330) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 704) [M::mem_pestat] mean and std.dev: (185.82, 72.23) [M::mem_pestat] low and high boundaries for proper pairs: (1, 891) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.79, 66.85) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (152, 392, 938) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2510) [M::mem_pestat] mean and std.dev: (630.81, 651.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3296) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 762430 reads in 201.937 CPU sec, 6.422 real sec [M::mem_process_seqs] Processed 768884 reads in 136.739 CPU sec, 4.370 real sec sorting block 9, #reads = 1102746 mem = 536877072 peak = 879001600 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (15, 304240, 15, 8) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (135, 170, 378) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 864) [M::mem_pestat] mean and std.dev: (176.92, 79.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1107) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.40, 66.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (415, 644, 830) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1660) [M::mem_pestat] mean and std.dev: (589.29, 354.10) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2075) [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::process] read 767728 sequences (100000065 bp) in 2.789 CPU sec, 2.938 real sec... [M::process] read 766522 sequences (100000092 bp) in 1.729 CPU sec, 1.732 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 304339, 6, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (121, 169, 738) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1972) [M::mem_pestat] mean and std.dev: (370.45, 354.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2589) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 384) [M::mem_pestat] mean and std.dev: (161.35, 67.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 475) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (151, 161, 1488) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4162) [M::mem_pestat] mean and std.dev: (429.12, 637.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5499) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 768960 reads in 194.024 CPU sec, 6.183 real sec [M::mem_process_seqs] Processed 767868 reads in 131.626 CPU sec, 4.191 real sec sorting block 10, #reads = 1112629 mem = 536880961 peak = 879001600 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 304491, 5, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (185, 304, 1179) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3167) [M::mem_pestat] mean and std.dev: (670.69, 627.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4161) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 384) [M::mem_pestat] mean and std.dev: (161.65, 67.43) [M::mem_pestat] low and high boundaries for proper pairs: (1, 475) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (153, 687, 932) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2490) [M::mem_pestat] mean and std.dev: (554.77, 469.44) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3269) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 766092 sequences (100000283 bp) in 2.666 CPU sec, 2.750 real sec... [M::process] read 765922 sequences (100000301 bp) in 2.140 CPU sec, 2.138 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 303609, 15, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (120, 226, 609) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1587) [M::mem_pestat] mean and std.dev: (341.21, 322.36) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2076) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.29, 67.80) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (150, 444, 1403) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3909) [M::mem_pestat] mean and std.dev: (636.57, 528.34) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5162) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (157, 211, 440) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1006) [M::mem_pestat] mean and std.dev: (245.58, 148.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1289) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 767728 reads in 199.203 CPU sec, 6.333 real sec sorting block 11, #reads = 1113602 mem = 536883096 peak = 879001600 [M::mem_process_seqs] Processed 766522 reads in 133.886 CPU sec, 4.257 real sec sorting block 12, #reads = 1111588 mem = 536882687 peak = 888299520 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 303802, 11, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (111, 151, 952) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2634) [M::mem_pestat] mean and std.dev: (617.29, 819.47) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3895) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.83, 68.28) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (726, 1150, 3847) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 10089) [M::mem_pestat] mean and std.dev: (1788.36, 1448.46) [M::mem_pestat] low and high boundaries for proper pairs: (1, 13210) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (132, 160, 223) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 405) [M::mem_pestat] mean and std.dev: (162.18, 43.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 496) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 764678 sequences (100000288 bp) in 2.592 CPU sec, 2.671 real sec... [M::process] read 763264 sequences (100000183 bp) in 1.929 CPU sec, 1.937 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (15, 303687, 7, 23) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (363, 954, 2579) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 7011) [M::mem_pestat] mean and std.dev: (1448.00, 1315.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 9227) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.53, 67.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (214, 380, 1445) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3907) [M::mem_pestat] mean and std.dev: (571.67, 496.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5138) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 766092 reads in 191.307 CPU sec, 6.082 real sec [M::mem_process_seqs] Processed 765922 reads in 128.929 CPU sec, 4.099 real sec sorting block 13, #reads = 1111262 mem = 536880658 peak = 888299520 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 303022, 10, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (280, 344, 1489) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3907) [M::mem_pestat] mean and std.dev: (699.57, 650.59) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5116) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 151, 205) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 391) [M::mem_pestat] mean and std.dev: (163.77, 68.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 484) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (84, 260, 369) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 939) [M::mem_pestat] mean and std.dev: (247.10, 182.37) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1224) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (170, 263, 2807) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 8081) [M::mem_pestat] mean and std.dev: (1025.50, 1334.27) [M::mem_pestat] low and high boundaries for proper pairs: (1, 10718) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 762644 sequences (100000136 bp) in 3.070 CPU sec, 3.182 real sec... [M::process] read 762172 sequences (100000031 bp) in 1.999 CPU sec, 2.004 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 302872, 5, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (137, 211, 682) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1772) [M::mem_pestat] mean and std.dev: (311.56, 291.60) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2317) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (164.99, 69.59) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (186, 390, 662) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1614) [M::mem_pestat] mean and std.dev: (357.54, 205.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2090) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 764678 reads in 193.375 CPU sec, 6.132 real sec sorting block 14, #reads = 1111468 mem = 536882797 peak = 888299520 [M::mem_process_seqs] Processed 763264 reads in 130.943 CPU sec, 4.160 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 302253, 10, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (148, 201, 592) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1480) [M::mem_pestat] mean and std.dev: (294.00, 203.63) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1924) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (165.09, 69.47) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (154, 761, 1042) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2818) [M::mem_pestat] mean and std.dev: (649.33, 590.40) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3706) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (160, 481, 1059) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2857) [M::mem_pestat] mean and std.dev: (569.17, 454.17) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3756) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 763148 sequences (100000058 bp) in 2.517 CPU sec, 2.600 real sec... [M::process] read 763730 sequences (100000230 bp) in 1.609 CPU sec, 1.601 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 301851, 5, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (168, 236, 835) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2169) [M::mem_pestat] mean and std.dev: (504.40, 505.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2836) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (165.40, 69.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (126, 310, 944) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2580) [M::mem_pestat] mean and std.dev: (364.80, 347.67) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3398) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 762644 reads in 191.418 CPU sec, 6.099 real sec sorting block 15, #reads = 1109378 mem = 536878226 peak = 888299520 [M::mem_process_seqs] Processed 762172 reads in 131.456 CPU sec, 4.193 real sec sorting block 16, #reads = 1107478 mem = 536878510 peak = 888299520 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (26, 302038, 4, 29) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (151, 249, 801) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2101) [M::mem_pestat] mean and std.dev: (442.42, 416.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2751) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (164.82, 69.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (135, 331, 1037) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2841) [M::mem_pestat] mean and std.dev: (627.89, 638.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3743) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 764150 sequences (100000135 bp) in 2.669 CPU sec, 2.740 real sec... [M::process] read 767180 sequences (100000180 bp) in 1.740 CPU sec, 1.740 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (34, 302503, 16, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (160, 416, 629) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1567) [M::mem_pestat] mean and std.dev: (383.69, 219.29) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2036) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392) [M::mem_pestat] mean and std.dev: (164.27, 68.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 485) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (193, 284, 1403) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3823) [M::mem_pestat] mean and std.dev: (592.36, 826.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5033) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (139, 157, 391) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 895) [M::mem_pestat] mean and std.dev: (267.45, 205.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1147) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 763148 reads in 195.883 CPU sec, 6.235 real sec [M::mem_process_seqs] Processed 763730 reads in 133.073 CPU sec, 4.241 real sec sorting block 17, #reads = 1105607 mem = 536878165 peak = 888299520 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 302066, 9, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (162, 208, 458) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1050) [M::mem_pestat] mean and std.dev: (347.18, 261.09) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1392) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392) [M::mem_pestat] mean and std.dev: (164.17, 69.02) [M::mem_pestat] low and high boundaries for proper pairs: (1, 485) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (157, 303, 1014) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2728) [M::mem_pestat] mean and std.dev: (559.53, 525.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3585) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 770768 sequences (100000022 bp) in 2.451 CPU sec, 2.534 real sec... [M::process] read 770726 sequences (100000190 bp) in 1.639 CPU sec, 1.636 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 303222, 3, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (89, 165, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1166) [M::mem_pestat] mean and std.dev: (325.33, 338.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1680) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 387) [M::mem_pestat] mean and std.dev: (161.93, 67.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 479) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (178, 366, 777) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1975) [M::mem_pestat] mean and std.dev: (412.25, 256.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2574) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 764150 reads in 201.787 CPU sec, 6.438 real sec sorting block 18, #reads = 1107800 mem = 536876979 peak = 888299520 [M::mem_process_seqs] Processed 767180 reads in 136.559 CPU sec, 4.364 real sec sorting block 19, #reads = 1104997 mem = 536879633 peak = 890691584 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 304785, 7, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (144, 195, 290) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 582) [M::mem_pestat] mean and std.dev: (226.00, 121.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 728) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 377) [M::mem_pestat] mean and std.dev: (159.26, 65.53) [M::mem_pestat] low and high boundaries for proper pairs: (1, 466) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (420, 1274, 1497) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3651) [M::mem_pestat] mean and std.dev: (1081.40, 1000.72) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5084) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 769466 sequences (100000150 bp) in 2.744 CPU sec, 2.815 real sec... [M::process] read 768286 sequences (100000275 bp) in 1.600 CPU sec, 1.603 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 305279, 9, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (124, 155, 936) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2560) [M::mem_pestat] mean and std.dev: (297.55, 343.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3372) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 377) [M::mem_pestat] mean and std.dev: (159.30, 65.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 466) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (129, 260, 2778) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 8076) [M::mem_pestat] mean and std.dev: (1155.54, 1584.02) [M::mem_pestat] low and high boundaries for proper pairs: (1, 10725) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 770768 reads in 183.577 CPU sec, 5.837 real sec [M::mem_process_seqs] Processed 770726 reads in 123.994 CPU sec, 3.958 real sec sorting block 20, #reads = 1113493 mem = 536879909 peak = 890691584 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 304682, 12, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (149, 219, 549) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1349) [M::mem_pestat] mean and std.dev: (239.00, 135.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1749) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (159.93, 65.94) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (150, 525, 1302) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3606) [M::mem_pestat] mean and std.dev: (422.40, 392.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4758) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (188, 240, 335) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 629) [M::mem_pestat] mean and std.dev: (246.88, 110.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 776) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 767186 sequences (100000231 bp) in 2.547 CPU sec, 2.610 real sec... [M::process] read 767132 sequences (100000199 bp) in 1.990 CPU sec, 1.982 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 304771, 10, 7) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (147, 660, 3189) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 9273) [M::mem_pestat] mean and std.dev: (1777.70, 2269.98) [M::mem_pestat] low and high boundaries for proper pairs: (1, 12315) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.80, 66.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (368, 596, 910) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1994) [M::mem_pestat] mean and std.dev: (729.20, 554.66) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2948) [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_process_seqs] Processed 769466 reads in 186.305 CPU sec, 5.921 real sec sorting block 21, #reads = 1113059 mem = 536882630 peak = 890691584 [M::mem_process_seqs] Processed 768286 reads in 124.930 CPU sec, 3.968 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 304134, 5, 25) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (138, 231, 763) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2013) [M::mem_pestat] mean and std.dev: (448.31, 412.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2638) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 387) [M::mem_pestat] mean and std.dev: (161.85, 67.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 479) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (163, 366, 1510) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4204) [M::mem_pestat] mean and std.dev: (549.09, 507.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5551) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 766650 sequences (100000126 bp) in 2.442 CPU sec, 2.533 real sec... [M::process] read 765776 sequences (100000223 bp) in 1.560 CPU sec, 1.566 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (15, 303791, 9, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (145, 734, 1198) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3304) [M::mem_pestat] mean and std.dev: (642.85, 703.52) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4357) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 387) [M::mem_pestat] mean and std.dev: (161.94, 67.64) [M::mem_pestat] low and high boundaries for proper pairs: (1, 479) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (148, 178, 402) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 910) [M::mem_pestat] mean and std.dev: (233.42, 129.09) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1164) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 767186 reads in 185.940 CPU sec, 5.926 real sec sorting block 22, #reads = 1112676 mem = 536878808 peak = 890691584 [M::mem_process_seqs] Processed 767132 reads in 127.090 CPU sec, 4.061 real sec sorting block 23, #reads = 1112727 mem = 536884126 peak = 928423936 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (8, 303959, 10, 16) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.12, 67.74) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (441, 3808, 6173) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 17637) [M::mem_pestat] mean and std.dev: (3370.30, 2788.43) [M::mem_pestat] low and high boundaries for proper pairs: (1, 23369) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (140, 222, 818) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2174) [M::mem_pestat] mean and std.dev: (414.69, 379.53) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2852) [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 765938 sequences (100000191 bp) in 2.276 CPU sec, 2.344 real sec... [M::process] read 764892 sequences (100000289 bp) in 1.830 CPU sec, 1.824 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 303562, 12, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (125, 554, 1374) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3872) [M::mem_pestat] mean and std.dev: (861.33, 918.66) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5121) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.62, 67.85) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (296, 1195, 1195) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2993) [M::mem_pestat] mean and std.dev: (831.27, 678.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3892) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (103, 210, 408) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1018) [M::mem_pestat] mean and std.dev: (247.67, 222.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1323) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 766650 reads in 180.523 CPU sec, 5.745 real sec [M::mem_process_seqs] Processed 765776 reads in 121.540 CPU sec, 3.864 real sec sorting block 24, #reads = 1111622 mem = 536879422 peak = 928423936 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 303339, 4, 25) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (219, 296, 713) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1701) [M::mem_pestat] mean and std.dev: (354.94, 224.64) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2195) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.79, 68.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (162, 290, 1279) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3513) [M::mem_pestat] mean and std.dev: (590.27, 724.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4630) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 763886 sequences (100000131 bp) in 2.726 CPU sec, 2.819 real sec... [M::process] read 764068 sequences (100000124 bp) in 1.910 CPU sec, 1.915 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 303249, 7, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (182, 448, 652) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1592) [M::mem_pestat] mean and std.dev: (391.60, 290.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2062) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 394) [M::mem_pestat] mean and std.dev: (164.12, 69.32) [M::mem_pestat] low and high boundaries for proper pairs: (1, 488) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (155, 209, 394) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 872) [M::mem_pestat] mean and std.dev: (199.18, 87.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1111) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 765938 reads in 192.119 CPU sec, 6.114 real sec sorting block 25, #reads = 1111272 mem = 536883537 peak = 928423936 [M::mem_process_seqs] Processed 764892 reads in 125.742 CPU sec, 4.008 real sec sorting block 26, #reads = 1110925 mem = 536878163 peak = 928423936 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 302970, 12, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (138, 433, 453) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1083) [M::mem_pestat] mean and std.dev: (333.00, 224.33) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1398) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392) [M::mem_pestat] mean and std.dev: (164.24, 69.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 485) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (422, 1044, 2836) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 7664) [M::mem_pestat] mean and std.dev: (1344.42, 1103.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 10078) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (161, 265, 466) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1076) [M::mem_pestat] mean and std.dev: (248.67, 117.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1381) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 764290 sequences (100000169 bp) in 2.322 CPU sec, 2.375 real sec... [M::process] read 764548 sequences (100000008 bp) in 1.680 CPU sec, 1.683 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 302787, 2, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (230, 488, 2390) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6710) [M::mem_pestat] mean and std.dev: (1041.56, 1192.47) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8870) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 392) [M::mem_pestat] mean and std.dev: (164.29, 69.21) [M::mem_pestat] low and high boundaries for proper pairs: (1, 485) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (241, 394, 1734) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4720) [M::mem_pestat] mean and std.dev: (931.14, 1083.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6213) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 763886 reads in 193.789 CPU sec, 6.179 real sec [M::mem_process_seqs] Processed 764068 reads in 134.163 CPU sec, 4.283 real sec sorting block 27, #reads = 1106342 mem = 536878870 peak = 928423936 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 302552, 15, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (152, 541, 1325) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3671) [M::mem_pestat] mean and std.dev: (716.50, 624.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4844) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 151, 205) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 391) [M::mem_pestat] mean and std.dev: (163.75, 68.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 484) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (393, 456, 1821) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4677) [M::mem_pestat] mean and std.dev: (645.58, 571.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6105) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (151, 451, 771) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2011) [M::mem_pestat] mean and std.dev: (519.92, 516.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2631) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 771112 sequences (100000180 bp) in 2.890 CPU sec, 2.964 real sec... [M::process] read 769356 sequences (100000213 bp) in 1.959 CPU sec, 1.961 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 302767, 4, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (137, 284, 1246) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3464) [M::mem_pestat] mean and std.dev: (507.71, 468.31) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4573) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 205) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 391) [M::mem_pestat] mean and std.dev: (163.45, 68.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 484) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (157, 845, 2026) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5764) [M::mem_pestat] mean and std.dev: (1267.42, 1410.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7633) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 764290 reads in 194.916 CPU sec, 6.187 real sec sorting block 28, #reads = 1106897 mem = 536881069 peak = 928423936 [M::mem_process_seqs] Processed 764548 reads in 131.829 CPU sec, 4.191 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 305147, 14, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (147, 229, 1021) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2769) [M::mem_pestat] mean and std.dev: (481.05, 543.21) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3643) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 377) [M::mem_pestat] mean and std.dev: (159.05, 65.41) [M::mem_pestat] low and high boundaries for proper pairs: (1, 466) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (1129, 1684, 2443) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5071) [M::mem_pestat] mean and std.dev: (1932.36, 1335.15) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7273) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (244, 263, 409) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 739) [M::mem_pestat] mean and std.dev: (255.93, 82.71) [M::mem_pestat] low and high boundaries for proper pairs: (1, 904) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 769604 sequences (100000124 bp) in 3.150 CPU sec, 3.272 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 304693, 7, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (160, 251, 584) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1432) [M::mem_pestat] mean and std.dev: (318.50, 248.09) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1856) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (160.07, 65.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (135, 170, 236) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 438) [M::mem_pestat] mean and std.dev: (172.46, 55.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 539) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 769018 sequences (100000216 bp) in 2.038 CPU sec, 2.039 real sec... [M::mem_process_seqs] Processed 771112 reads in 193.932 CPU sec, 6.153 real sec sorting block 29, #reads = 1106864 mem = 536879617 peak = 928423936 [M::mem_process_seqs] Processed 769356 reads in 134.186 CPU sec, 4.263 real sec sorting block 30, #reads = 1114256 mem = 536883408 peak = 989396992 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 304852, 2, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (139, 183, 1251) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3475) [M::mem_pestat] mean and std.dev: (480.45, 708.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4587) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (159.83, 65.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (190, 629, 975) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2545) [M::mem_pestat] mean and std.dev: (665.88, 601.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3330) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 768664 sequences (100000036 bp) in 3.062 CPU sec, 3.133 real sec... [M::process] read 767740 sequences (100000043 bp) in 2.033 CPU sec, 2.041 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 304442, 8, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (150, 248, 1130) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3090) [M::mem_pestat] mean and std.dev: (434.75, 411.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4070) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.69, 66.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (168, 219, 259) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 441) [M::mem_pestat] mean and std.dev: (187.44, 59.19) [M::mem_pestat] low and high boundaries for proper pairs: (1, 532) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 769604 reads in 196.991 CPU sec, 6.256 real sec [M::process] read 767450 sequences (100000217 bp) in 2.350 CPU sec, 2.360 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (26, 303976, 2, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (157, 669, 5684) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 16738) [M::mem_pestat] mean and std.dev: (2145.81, 2563.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 22265) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 387) [M::mem_pestat] mean and std.dev: (161.82, 67.66) [M::mem_pestat] low and high boundaries for proper pairs: (1, 479) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (178, 469, 1384) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3796) [M::mem_pestat] mean and std.dev: (625.64, 655.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5002) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 767740 reads in 106.086 CPU sec, 3.485 real sec sorting block 31, #reads = 1114426 mem = 536878077 peak = 989396992 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 304696, 6, 6) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (156, 427, 1208) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3312) [M::mem_pestat] mean and std.dev: (620.82, 644.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4364) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.66, 66.63) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_process_seqs] Processed 768664 reads in 217.016 CPU sec, 7.825 real sec sorting block 32, #reads = 1113008 mem = 536878874 peak = 1023025152 [M::mem_process_seqs] Processed 769018 reads in 410.670 CPU sec, 13.968 real sec [M::process] read 766820 sequences (100000227 bp) in 2.638 CPU sec, 2.709 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 303531, 11, 22) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (168, 358, 1237) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3375) [M::mem_pestat] mean and std.dev: (666.36, 708.60) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4444) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 384) [M::mem_pestat] mean and std.dev: (161.54, 67.26) [M::mem_pestat] low and high boundaries for proper pairs: (1, 475) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (19, 480, 525) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1537) [M::mem_pestat] mean and std.dev: (391.09, 413.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2044) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (177, 372, 1919) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5403) [M::mem_pestat] mean and std.dev: (1093.23, 1083.60) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7145) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR sorting block 33, #reads = 1113997 mem = 536879969 peak = 1023025152 [M::process] read 765858 sequences (100000077 bp) in 2.503 CPU sec, 2.638 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 303756, 14, 22) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (167, 439, 3710) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 10796) [M::mem_pestat] mean and std.dev: (1296.57, 1562.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 14339) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.00, 67.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (224, 1180, 1530) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4142) [M::mem_pestat] mean and std.dev: (965.43, 823.99) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5448) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (132, 177, 425) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1011) [M::mem_pestat] mean and std.dev: (250.82, 164.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1304) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 767450 reads in 224.041 CPU sec, 7.070 real sec [M::process] read 765294 sequences (100000131 bp) in 1.758 CPU sec, 1.770 real sec... [M::mem_process_seqs] Processed 766820 reads in 137.117 CPU sec, 4.344 real sec sorting block 34, #reads = 1112035 mem = 536880418 peak = 1023025152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 303522, 15, 24) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (224, 344, 659) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1529) [M::mem_pestat] mean and std.dev: (391.22, 276.64) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1964) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 205) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 391) [M::mem_pestat] mean and std.dev: (163.17, 68.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 484) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (524, 861, 2848) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 7496) [M::mem_pestat] mean and std.dev: (1624.87, 1566.10) [M::mem_pestat] low and high boundaries for proper pairs: (1, 9820) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (187, 271, 405) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 841) [M::mem_pestat] mean and std.dev: (267.32, 126.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1059) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 764122 sequences (100000206 bp) in 2.965 CPU sec, 3.054 real sec... [M::process] read 762468 sequences (100000011 bp) in 2.059 CPU sec, 2.079 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 303700, 5, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (182, 308, 310) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 566) [M::mem_pestat] mean and std.dev: (243.40, 86.56) [M::mem_pestat] low and high boundaries for proper pairs: (1, 694) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 206) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 394) [M::mem_pestat] mean and std.dev: (163.74, 69.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 488) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (172, 720, 1047) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2797) [M::mem_pestat] mean and std.dev: (675.75, 525.94) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3672) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 765858 reads in 197.792 CPU sec, 6.315 real sec [M::mem_process_seqs] Processed 765294 reads in 135.095 CPU sec, 4.363 real sec sorting block 35, #reads = 1112171 mem = 536877392 peak = 1023025152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 302951, 10, 33) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (185, 213, 334) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 632) [M::mem_pestat] mean and std.dev: (251.10, 102.99) [M::mem_pestat] low and high boundaries for proper pairs: (1, 781) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 151, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 397) [M::mem_pestat] mean and std.dev: (164.81, 69.91) [M::mem_pestat] low and high boundaries for proper pairs: (1, 492) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (235, 2447, 2447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6871) [M::mem_pestat] mean and std.dev: (1426.00, 1072.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 9083) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (113, 195, 1109) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3101) [M::mem_pestat] mean and std.dev: (504.53, 608.15) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4097) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 762612 sequences (100000024 bp) in 2.933 CPU sec, 3.237 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 302151, 13, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (150, 207, 457) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1071) [M::mem_pestat] mean and std.dev: (331.58, 243.25) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1378) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 208) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 398) [M::mem_pestat] mean and std.dev: (165.59, 70.13) [M::mem_pestat] low and high boundaries for proper pairs: (1, 493) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (111, 348, 1013) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2817) [M::mem_pestat] mean and std.dev: (513.00, 605.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3719) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (129, 208, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1095) [M::mem_pestat] mean and std.dev: (279.82, 206.92) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1417) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 762600 sequences (100000175 bp) in 1.719 CPU sec, 1.740 real sec... [M::mem_process_seqs] Processed 764122 reads in 200.089 CPU sec, 6.474 real sec sorting block 36, #reads = 1109233 mem = 536878881 peak = 1023025152 [M::mem_process_seqs] Processed 762468 reads in 138.138 CPU sec, 4.432 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (15, 302201, 8, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (117, 161, 782) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2112) [M::mem_pestat] mean and std.dev: (372.27, 370.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2777) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 207) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 395) [M::mem_pestat] mean and std.dev: (165.33, 69.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 489) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (233, 335, 1112) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2870) [M::mem_pestat] mean and std.dev: (795.00, 841.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4163) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR sorting block 37, #reads = 1109104 mem = 536878533 peak = 1023025152 [M::process] read 770582 sequences (100000089 bp) in 2.907 CPU sec, 3.083 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 302007, 11, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (136, 242, 401) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 931) [M::mem_pestat] mean and std.dev: (224.00, 98.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1196) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 152, 208) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 398) [M::mem_pestat] mean and std.dev: (165.58, 69.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 493) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (202, 573, 2514) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 7138) [M::mem_pestat] mean and std.dev: (1136.73, 1424.73) [M::mem_pestat] low and high boundaries for proper pairs: (1, 9450) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (151, 200, 1094) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2980) [M::mem_pestat] mean and std.dev: (440.53, 690.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3923) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 773308 sequences (100000244 bp) in 2.065 CPU sec, 2.109 real sec... [M::mem_process_seqs] Processed 762612 reads in 205.223 CPU sec, 6.631 real sec [M::mem_process_seqs] Processed 762600 reads in 142.824 CPU sec, 4.601 real sec sorting block 38, #reads = 1106345 mem = 536881707 peak = 1023025152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 304934, 5, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (121, 174, 292) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 634) [M::mem_pestat] mean and std.dev: (168.94, 66.74) [M::mem_pestat] low and high boundaries for proper pairs: (1, 805) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 147, 198) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 374) [M::mem_pestat] mean and std.dev: (158.75, 64.76) [M::mem_pestat] low and high boundaries for proper pairs: (1, 462) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (155, 311, 2293) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6569) [M::mem_pestat] mean and std.dev: (1217.00, 1597.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8707) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 772206 sequences (100000185 bp) in 2.546 CPU sec, 2.700 real sec... [M::process] read 769956 sequences (100000056 bp) in 1.758 CPU sec, 1.851 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (16, 305646, 9, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (188, 313, 931) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2417) [M::mem_pestat] mean and std.dev: (449.00, 346.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3160) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 145, 195) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 365) [M::mem_pestat] mean and std.dev: (156.37, 62.66) [M::mem_pestat] low and high boundaries for proper pairs: (1, 450) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (125, 614, 1751) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5003) [M::mem_pestat] mean and std.dev: (1090.00, 1166.20) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6629) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 770582 reads in 217.955 CPU sec, 7.009 real sec sorting block 39, #reads = 1103615 mem = 536878721 peak = 1023025152 [M::mem_process_seqs] Processed 773308 reads in 148.219 CPU sec, 4.786 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (7, 305506, 10, 18) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 146, 197) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 371) [M::mem_pestat] mean and std.dev: (157.59, 63.88) [M::mem_pestat] low and high boundaries for proper pairs: (1, 458) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (172, 574, 1514) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4198) [M::mem_pestat] mean and std.dev: (1005.70, 1166.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5672) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (159, 419, 1356) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3750) [M::mem_pestat] mean and std.dev: (701.29, 809.19) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4947) [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR sorting block 40, #reads = 1111010 mem = 536879436 peak = 1023025152 [M::process] read 769586 sequences (100000187 bp) in 2.925 CPU sec, 3.091 real sec... [M::process] read 768764 sequences (100000173 bp) in 2.094 CPU sec, 2.095 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 304540, 10, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (153, 262, 779) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2031) [M::mem_pestat] mean and std.dev: (364.00, 312.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2657) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 375) [M::mem_pestat] mean and std.dev: (159.05, 64.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 463) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (336, 1124, 1858) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4902) [M::mem_pestat] mean and std.dev: (1218.80, 1033.17) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6424) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (192, 232, 347) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 657) [M::mem_pestat] mean and std.dev: (253.31, 125.29) [M::mem_pestat] low and high boundaries for proper pairs: (1, 812) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 772206 reads in 209.658 CPU sec, 6.736 real sec [M::mem_process_seqs] Processed 769956 reads in 141.045 CPU sec, 4.596 real sec sorting block 41, #reads = 1111445 mem = 536876861 peak = 1023025152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (16, 304477, 14, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (133, 173, 572) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1450) [M::mem_pestat] mean and std.dev: (275.87, 197.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1889) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (159.60, 65.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (123, 229, 531) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1347) [M::mem_pestat] mean and std.dev: (255.83, 194.72) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1755) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (153, 388, 706) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1812) [M::mem_pestat] mean and std.dev: (411.40, 323.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2365) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 768592 sequences (100000031 bp) in 3.101 CPU sec, 3.195 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (16, 305015, 9, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (142, 257, 417) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 967) [M::mem_pestat] mean and std.dev: (256.13, 152.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1242) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (160.17, 65.85) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (147, 248, 1708) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4830) [M::mem_pestat] mean and std.dev: (758.71, 874.76) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6391) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 767176 sequences (100000097 bp) in 1.847 CPU sec, 1.890 real sec... [M::mem_process_seqs] Processed 769586 reads in 203.481 CPU sec, 6.547 real sec [M::mem_process_seqs] Processed 768764 reads in 139.229 CPU sec, 4.481 real sec sorting block 42, #reads = 1110956 mem = 536878616 peak = 1023025152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 304530, 15, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (230, 306, 926) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2318) [M::mem_pestat] mean and std.dev: (535.00, 441.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3014) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.43, 66.33) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (359, 859, 1282) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3128) [M::mem_pestat] mean and std.dev: (751.46, 595.66) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4051) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (171, 187, 440) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 978) [M::mem_pestat] mean and std.dev: (206.42, 95.47) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1247) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 765078 sequences (100000098 bp) in 2.858 CPU sec, 3.051 real sec... [M::process] read 763930 sequences (100000079 bp) in 1.869 CPU sec, 1.906 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 303627, 7, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (107, 169, 591) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1559) [M::mem_pestat] mean and std.dev: (312.29, 259.11) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2043) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 384) [M::mem_pestat] mean and std.dev: (161.25, 66.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 475) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (202, 269, 724) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1768) [M::mem_pestat] mean and std.dev: (337.31, 289.36) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2290) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 768592 reads in 207.385 CPU sec, 6.706 real sec sorting block 43, #reads = 1112617 mem = 536882942 peak = 1023025152 [M::mem_process_seqs] Processed 767176 reads in 144.512 CPU sec, 4.709 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 302785, 11, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (173, 662, 800) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2054) [M::mem_pestat] mean and std.dev: (620.95, 450.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2681) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.66, 67.45) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (191, 338, 687) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1679) [M::mem_pestat] mean and std.dev: (317.44, 243.92) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2175) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (174, 626, 1762) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4938) [M::mem_pestat] mean and std.dev: (915.31, 783.23) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6526) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR sorting block 44, #reads = 1110627 mem = 536879432 peak = 1052008448 [M::process] read 764806 sequences (100000227 bp) in 2.788 CPU sec, 3.215 real sec... [M::process] read 764818 sequences (100000172 bp) in 2.054 CPU sec, 2.075 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 302715, 13, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (259, 493, 1240) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3202) [M::mem_pestat] mean and std.dev: (587.55, 482.13) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4183) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 386) [M::mem_pestat] mean and std.dev: (162.94, 67.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 477) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (125, 636, 2336) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6758) [M::mem_pestat] mean and std.dev: (1113.75, 1416.26) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8969) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (117, 175, 323) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 735) [M::mem_pestat] mean and std.dev: (200.00, 117.31) [M::mem_pestat] low and high boundaries for proper pairs: (1, 941) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 765078 reads in 212.194 CPU sec, 6.899 real sec [M::mem_process_seqs] Processed 763930 reads in 144.992 CPU sec, 4.661 real sec sorting block 45, #reads = 1106183 mem = 536881061 peak = 1052008448 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 301978, 12, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (154, 228, 655) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1657) [M::mem_pestat] mean and std.dev: (375.12, 262.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2158) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.38, 66.94) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (143, 440, 1885) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5369) [M::mem_pestat] mean and std.dev: (1018.50, 1238.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7111) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (194, 231, 2775) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 7937) [M::mem_pestat] mean and std.dev: (1924.26, 2813.15) [M::mem_pestat] low and high boundaries for proper pairs: (1, 13177) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 764324 sequences (100000155 bp) in 2.698 CPU sec, 2.750 real sec... [M::process] read 763712 sequences (100000065 bp) in 2.080 CPU sec, 2.082 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 302748, 9, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (163, 462, 1030) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2764) [M::mem_pestat] mean and std.dev: (485.11, 394.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3631) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (162.71, 67.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (122, 148, 188) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 320) [M::mem_pestat] mean and std.dev: (147.07, 35.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 386) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 764806 reads in 210.462 CPU sec, 6.740 real sec sorting block 46, #reads = 1106051 mem = 536882571 peak = 1052008448 [M::mem_process_seqs] Processed 764818 reads in 144.493 CPU sec, 4.584 real sec sorting block 47, #reads = 1104430 mem = 536877701 peak = 1052008448 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 302344, 9, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (171, 280, 734) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1860) [M::mem_pestat] mean and std.dev: (445.60, 410.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2423) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (163.12, 67.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (159, 248, 911) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2415) [M::mem_pestat] mean and std.dev: (535.47, 462.82) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3167) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 772800 sequences (100000284 bp) in 3.116 CPU sec, 3.172 real sec... [M::process] read 775330 sequences (100000140 bp) in 2.070 CPU sec, 2.076 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 301904, 13, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (153, 417, 1223) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3363) [M::mem_pestat] mean and std.dev: (512.40, 663.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4433) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (113, 151, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 386) [M::mem_pestat] mean and std.dev: (163.07, 67.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 477) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (311, 1135, 6673) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 19397) [M::mem_pestat] mean and std.dev: (2735.77, 2869.71) [M::mem_pestat] low and high boundaries for proper pairs: (1, 25759) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (126, 209, 322) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 714) [M::mem_pestat] mean and std.dev: (242.54, 154.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 910) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 764324 reads in 201.292 CPU sec, 6.379 real sec [M::mem_process_seqs] Processed 763712 reads in 138.585 CPU sec, 4.404 real sec sorting block 48, #reads = 1104256 mem = 536878484 peak = 1052008448 [M::process] read 774136 sequences (100000189 bp) in 2.776 CPU sec, 2.815 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (9, 305142, 16, 22) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 145, 196) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 368) [M::mem_pestat] mean and std.dev: (157.15, 63.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 454) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (371, 1219, 1856) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4826) [M::mem_pestat] mean and std.dev: (1110.80, 1069.74) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6311) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (156, 203, 804) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2100) [M::mem_pestat] mean and std.dev: (333.65, 309.21) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2748) [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 772360 sequences (100000180 bp) in 1.990 CPU sec, 1.989 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (8, 305861, 9, 22) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (109, 144, 194) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 364) [M::mem_pestat] mean and std.dev: (155.48, 62.18) [M::mem_pestat] low and high boundaries for proper pairs: (1, 449) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (156, 424, 980) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2628) [M::mem_pestat] mean and std.dev: (488.75, 432.36) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3452) [M::mem_pestat] skip orientation RR [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 305900, 9, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (134, 231, 931) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2525) [M::mem_pestat] mean and std.dev: (427.67, 460.44) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3322) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (109, 145, 195) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 367) [M::mem_pestat] mean and std.dev: (156.31, 63.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 453) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (121, 163, 1377) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3889) [M::mem_pestat] mean and std.dev: (807.82, 1088.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5160) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 772800 reads in 305.415 CPU sec, 9.751 real sec [M::mem_process_seqs] Processed 775330 reads in 236.927 CPU sec, 7.593 real sec sorting block 49, #reads = 1102414 mem = 536885244 peak = 1052008448 [M::mem_process_seqs] Processed 774136 reads in 268.029 CPU sec, 8.603 real sec [M::process] read 771186 sequences (100000024 bp) in 2.981 CPU sec, 3.074 real sec... sorting block 50, #reads = 1103462 mem = 536880464 peak = 1052008448 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 305391, 7, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (162, 327, 693) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1755) [M::mem_pestat] mean and std.dev: (307.30, 203.15) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2286) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 146, 196) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 368) [M::mem_pestat] mean and std.dev: (157.43, 63.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 454) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (187, 263, 2102) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5932) [M::mem_pestat] mean and std.dev: (828.85, 987.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7847) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 769238 sequences (100000138 bp) in 2.497 CPU sec, 2.576 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 305074, 11, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (146, 164, 231) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 401) [M::mem_pestat] mean and std.dev: (165.10, 36.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 486) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 146, 197) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 371) [M::mem_pestat] mean and std.dev: (158.05, 63.92) [M::mem_pestat] low and high boundaries for proper pairs: (1, 458) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (120, 257, 1063) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2949) [M::mem_pestat] mean and std.dev: (404.64, 422.47) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3892) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (126, 212, 1087) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3009) [M::mem_pestat] mean and std.dev: (673.94, 821.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3970) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 769512 sequences (100000159 bp) in 1.930 CPU sec, 1.930 real sec... [M::mem_process_seqs] Processed 772360 reads in 218.560 CPU sec, 6.948 real sec sorting block 51, #reads = 1102101 mem = 536882652 peak = 1052008448 [M::process] read 768498 sequences (100000158 bp) in 2.183 CPU sec, 2.187 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 304159, 14, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (128, 153, 248) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 488) [M::mem_pestat] mean and std.dev: (184.31, 86.20) [M::mem_pestat] low and high boundaries for proper pairs: (1, 608) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 375) [M::mem_pestat] mean and std.dev: (159.56, 65.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 463) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (215, 319, 1271) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3383) [M::mem_pestat] mean and std.dev: (733.85, 839.42) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4439) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (189, 346, 596) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1410) [M::mem_pestat] mean and std.dev: (404.24, 269.15) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1817) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 769238 reads in 122.483 CPU sec, 4.216 real sec [M::mem_process_seqs] Processed 771186 reads in 304.611 CPU sec, 9.992 real sec sorting block 52, #reads = 1107498 mem = 536880700 peak = 1052008448 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 304863, 9, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (121, 333, 801) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2161) [M::mem_pestat] mean and std.dev: (448.50, 382.50) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2841) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 375) [M::mem_pestat] mean and std.dev: (159.37, 65.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 463) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (158, 216, 287) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 545) [M::mem_pestat] mean and std.dev: (199.93, 77.94) [M::mem_pestat] low and high boundaries for proper pairs: (1, 674) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 766816 sequences (100000250 bp) in 2.505 CPU sec, 2.593 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 304418, 8, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (159, 205, 1071) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2895) [M::mem_pestat] mean and std.dev: (539.22, 493.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3807) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (159.98, 65.47) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (214, 370, 1783) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4921) [M::mem_pestat] mean and std.dev: (817.71, 976.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6490) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 765878 sequences (100000283 bp) in 1.960 CPU sec, 1.963 real sec... [M::mem_process_seqs] Processed 769512 reads in 224.324 CPU sec, 7.134 real sec sorting block 53, #reads = 1108502 mem = 536878228 peak = 1052008448 [M::mem_process_seqs] Processed 768498 reads in 133.807 CPU sec, 4.243 real sec sorting block 54, #reads = 1107835 mem = 536881468 peak = 1052008448 [M::process] read 764788 sequences (100000264 bp) in 2.644 CPU sec, 2.725 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (9, 303715, 9, 18) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 382) [M::mem_pestat] mean and std.dev: (161.37, 66.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 472) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (157, 394, 831) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2179) [M::mem_pestat] mean and std.dev: (423.33, 317.33) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2853) [M::mem_pestat] skip orientation RR [M::process] read 765214 sequences (100000012 bp) in 1.910 CPU sec, 1.910 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 303198, 10, 22) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (134, 180, 523) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1301) [M::mem_pestat] mean and std.dev: (310.47, 268.17) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1690) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.00, 66.98) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (132, 1143, 1865) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5331) [M::mem_pestat] mean and std.dev: (1649.00, 1834.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8987) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (168, 221, 646) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1602) [M::mem_pestat] mean and std.dev: (472.71, 485.40) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2414) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 302546, 12, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (158, 339, 1591) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4457) [M::mem_pestat] mean and std.dev: (672.91, 699.67) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5890) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.36, 66.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (830, 1189, 1189) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (112, 1907) [M::mem_pestat] mean and std.dev: (936.00, 315.81) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2266) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (163, 278, 542) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1300) [M::mem_pestat] mean and std.dev: (324.25, 232.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1679) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 766816 reads in 277.517 CPU sec, 8.851 real sec [M::mem_process_seqs] Processed 765878 reads in 213.176 CPU sec, 6.830 real sec [M::mem_process_seqs] Processed 764788 reads in 237.005 CPU sec, 7.629 real sec sorting block 55, #reads = 1107135 mem = 536879721 peak = 1052008448 [M::process] read 766032 sequences (100000075 bp) in 2.571 CPU sec, 2.661 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 302429, 19, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (298, 373, 1679) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4441) [M::mem_pestat] mean and std.dev: (803.09, 641.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5822) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.05, 66.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (124, 353, 875) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2377) [M::mem_pestat] mean and std.dev: (459.24, 540.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3128) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (126, 150, 224) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 420) [M::mem_pestat] mean and std.dev: (154.20, 40.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 518) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR sorting block 56, #reads = 1106288 mem = 536885694 peak = 1052008448 [M::process] read 765216 sequences (100000161 bp) in 2.399 CPU sec, 2.466 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 303030, 12, 20) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (144, 228, 505) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1227) [M::mem_pestat] mean and std.dev: (272.82, 181.85) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1588) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 382) [M::mem_pestat] mean and std.dev: (161.65, 66.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 472) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (257, 316, 1035) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2591) [M::mem_pestat] mean and std.dev: (439.09, 362.80) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3369) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (134, 276, 594) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1514) [M::mem_pestat] mean and std.dev: (311.67, 256.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1974) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 765214 reads in 203.480 CPU sec, 6.472 real sec [M::process] read 774640 sequences (100000114 bp) in 2.014 CPU sec, 2.027 real sec... [M::mem_process_seqs] Processed 766032 reads in 141.142 CPU sec, 4.449 real sec sorting block 57, #reads = 1105134 mem = 536887816 peak = 1052008448 [M::process] read 773844 sequences (100000136 bp) in 2.681 CPU sec, 2.754 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 302002, 11, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (189, 440, 1149) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3069) [M::mem_pestat] mean and std.dev: (723.92, 708.20) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4029) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 382) [M::mem_pestat] mean and std.dev: (161.59, 66.37) [M::mem_pestat] low and high boundaries for proper pairs: (1, 472) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (458, 574, 873) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1703) [M::mem_pestat] mean and std.dev: (596.60, 278.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2118) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (152, 266, 331) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 689) [M::mem_pestat] mean and std.dev: (250.75, 139.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 868) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 772244 sequences (100000198 bp) in 1.891 CPU sec, 1.896 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 306627, 5, 20) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (160, 191, 831) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2173) [M::mem_pestat] mean and std.dev: (413.42, 415.07) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2844) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (109, 145, 196) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 370) [M::mem_pestat] mean and std.dev: (156.95, 63.59) [M::mem_pestat] low and high boundaries for proper pairs: (1, 457) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (177, 439, 1919) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5403) [M::mem_pestat] mean and std.dev: (966.70, 959.43) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7145) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 305944, 8, 10) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (280, 567, 1960) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5320) [M::mem_pestat] mean and std.dev: (937.41, 933.45) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7000) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (109, 145, 195) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 367) [M::mem_pestat] mean and std.dev: (156.25, 62.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 453) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (133, 179, 2349) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6781) [M::mem_pestat] mean and std.dev: (1026.80, 1312.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8997) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 765216 reads in 292.512 CPU sec, 9.337 real sec [M::mem_process_seqs] Processed 773844 reads in 219.437 CPU sec, 7.028 real sec sorting block 58, #reads = 1103896 mem = 536878572 peak = 1052008448 [M::mem_process_seqs] Processed 774640 reads in 245.403 CPU sec, 7.880 real sec sorting block 59, #reads = 1104825 mem = 536883709 peak = 1052008448 [M::process] read 769814 sequences (100000233 bp) in 2.857 CPU sec, 2.959 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (15, 305662, 6, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (172, 351, 920) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2416) [M::mem_pestat] mean and std.dev: (595.73, 569.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3164) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 146, 197) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 371) [M::mem_pestat] mean and std.dev: (157.78, 64.10) [M::mem_pestat] low and high boundaries for proper pairs: (1, 458) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (131, 173, 402) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 944) [M::mem_pestat] mean and std.dev: (200.83, 113.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1215) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 769106 sequences (100000008 bp) in 2.382 CPU sec, 2.434 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 304906, 8, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (128, 182, 553) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1403) [M::mem_pestat] mean and std.dev: (343.86, 301.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1828) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 375) [M::mem_pestat] mean and std.dev: (159.16, 65.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 463) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (147, 283, 791) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2079) [M::mem_pestat] mean and std.dev: (466.47, 453.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2723) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 772244 reads in 196.747 CPU sec, 6.266 real sec [M::process] read 768610 sequences (100000261 bp) in 2.037 CPU sec, 2.059 real sec... sorting block 60, #reads = 1111908 mem = 536879437 peak = 1052008448 [M::mem_process_seqs] Processed 769814 reads in 133.503 CPU sec, 4.207 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 305211, 6, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (127, 244, 478) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1180) [M::mem_pestat] mean and std.dev: (284.56, 183.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1531) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (159.97, 65.64) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (205, 316, 1498) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4084) [M::mem_pestat] mean and std.dev: (691.40, 673.53) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5377) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR sorting block 61, #reads = 1112072 mem = 536878931 peak = 1052008448 [M::process] read 768496 sequences (100000010 bp) in 2.247 CPU sec, 2.322 real sec... [M::process] read 768476 sequences (100000095 bp) in 1.660 CPU sec, 1.655 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 304413, 4, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (196, 352, 967) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2509) [M::mem_pestat] mean and std.dev: (380.55, 256.19) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3280) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.51, 66.33) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (146, 168, 1168) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3212) [M::mem_pestat] mean and std.dev: (362.58, 404.45) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4234) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 769106 reads in 190.174 CPU sec, 6.060 real sec [M::mem_process_seqs] Processed 768610 reads in 127.261 CPU sec, 4.060 real sec sorting block 62, #reads = 1111585 mem = 536878867 peak = 1052008448 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 304230, 10, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (152, 398, 1100) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2996) [M::mem_pestat] mean and std.dev: (615.92, 656.28) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3944) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.62, 66.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (13, 273, 986) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2932) [M::mem_pestat] mean and std.dev: (476.40, 561.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3905) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (149, 254, 379) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 839) [M::mem_pestat] mean and std.dev: (259.58, 134.45) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1069) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 768970 sequences (100000008 bp) in 2.614 CPU sec, 2.672 real sec... [M::process] read 769060 sequences (100000081 bp) in 1.980 CPU sec, 1.981 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 304665, 5, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (138, 207, 389) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 891) [M::mem_pestat] mean and std.dev: (216.38, 135.91) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1142) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (160.20, 65.56) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (176, 230, 7815) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 23093) [M::mem_pestat] mean and std.dev: (2371.25, 3775.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 30732) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 768496 reads in 201.841 CPU sec, 6.414 real sec sorting block 63, #reads = 1112104 mem = 536883521 peak = 1052008448 [M::mem_process_seqs] Processed 768476 reads in 139.276 CPU sec, 4.431 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 304447, 6, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (119, 328, 867) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2363) [M::mem_pestat] mean and std.dev: (460.20, 407.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3111) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 375) [M::mem_pestat] mean and std.dev: (159.50, 65.09) [M::mem_pestat] low and high boundaries for proper pairs: (1, 463) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (163, 278, 2999) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 8671) [M::mem_pestat] mean and std.dev: (1399.06, 2221.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 11507) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 768246 sequences (100000268 bp) in 2.534 CPU sec, 2.600 real sec... [M::process] read 767076 sequences (100000198 bp) in 1.860 CPU sec, 1.860 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 304531, 4, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (161, 290, 998) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2672) [M::mem_pestat] mean and std.dev: (333.14, 279.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3509) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 375) [M::mem_pestat] mean and std.dev: (159.44, 65.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 463) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (135, 155, 249) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 477) [M::mem_pestat] mean and std.dev: (164.67, 50.20) [M::mem_pestat] low and high boundaries for proper pairs: (1, 591) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 768970 reads in 202.097 CPU sec, 6.426 real sec sorting block 64, #reads = 1111385 mem = 536881874 peak = 1052008448 [M::mem_process_seqs] Processed 769060 reads in 135.048 CPU sec, 4.302 real sec sorting block 65, #reads = 1109933 mem = 536877166 peak = 1052008448 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 304301, 11, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (167, 425, 1005) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2681) [M::mem_pestat] mean and std.dev: (549.91, 520.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3519) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.46, 66.17) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (256, 659, 5511) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 16021) [M::mem_pestat] mean and std.dev: (2230.73, 2492.27) [M::mem_pestat] low and high boundaries for proper pairs: (1, 21276) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (148, 236, 634) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1606) [M::mem_pestat] mean and std.dev: (275.46, 201.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2092) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 766174 sequences (100000208 bp) in 2.355 CPU sec, 2.425 real sec... [M::process] read 766508 sequences (100000152 bp) in 1.680 CPU sec, 1.677 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 303825, 12, 24) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (256, 669, 1017) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2539) [M::mem_pestat] mean and std.dev: (701.67, 520.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3300) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 149, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.94, 66.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (315, 726, 1803) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4779) [M::mem_pestat] mean and std.dev: (763.27, 596.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 6267) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (177, 249, 1415) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3891) [M::mem_pestat] mean and std.dev: (455.38, 477.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5129) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 768246 reads in 196.484 CPU sec, 6.262 real sec [M::mem_process_seqs] Processed 767076 reads in 136.639 CPU sec, 4.361 real sec sorting block 66, #reads = 1109531 mem = 536879032 peak = 1052008448 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 303192, 14, 22) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (141, 331, 845) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2253) [M::mem_pestat] mean and std.dev: (516.07, 513.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2957) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 202) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 382) [M::mem_pestat] mean and std.dev: (161.58, 66.53) [M::mem_pestat] low and high boundaries for proper pairs: (1, 472) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (159, 878, 4576) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 13410) [M::mem_pestat] mean and std.dev: (2008.50, 2372.59) [M::mem_pestat] low and high boundaries for proper pairs: (1, 17827) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (147, 222, 1027) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2787) [M::mem_pestat] mean and std.dev: (582.81, 689.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3667) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 774718 sequences (100000223 bp) in 2.641 CPU sec, 2.709 real sec... [M::process] read 777318 sequences (100000071 bp) in 2.030 CPU sec, 2.030 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 303272, 9, 8) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (195, 225, 652) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1566) [M::mem_pestat] mean and std.dev: (309.18, 201.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2023) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 379) [M::mem_pestat] mean and std.dev: (160.95, 65.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 468) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_process_seqs] Processed 766174 reads in 205.536 CPU sec, 6.535 real sec sorting block 67, #reads = 1107975 mem = 536892220 peak = 1052008448 [M::mem_process_seqs] Processed 766508 reads in 145.741 CPU sec, 4.632 real sec [M::process] read 776454 sequences (100000093 bp) in 2.564 CPU sec, 2.628 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 305679, 8, 3) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (166, 642, 1616) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4516) [M::mem_pestat] mean and std.dev: (825.19, 754.24) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5966) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (109, 144, 194) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 364) [M::mem_pestat] mean and std.dev: (155.92, 62.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 449) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::process] read 776194 sequences (100000009 bp) in 1.770 CPU sec, 1.772 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (8, 307071, 7, 16) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (108, 143, 192) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 360) [M::mem_pestat] mean and std.dev: (154.38, 61.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 444) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (150, 231, 432) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 996) [M::mem_pestat] mean and std.dev: (241.71, 132.32) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1278) [M::mem_pestat] skip orientation RR [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 307050, 10, 9) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (134, 171, 344) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 764) [M::mem_pestat] mean and std.dev: (198.14, 105.48) [M::mem_pestat] low and high boundaries for proper pairs: (1, 974) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (109, 144, 193) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 361) [M::mem_pestat] mean and std.dev: (154.87, 61.88) [M::mem_pestat] low and high boundaries for proper pairs: (1, 445) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (160, 648, 1360) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3760) [M::mem_pestat] mean and std.dev: (726.60, 598.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4960) [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_process_seqs] Processed 774718 reads in 317.908 CPU sec, 10.161 real sec sorting block 68, #reads = 1102895 mem = 536886296 peak = 1052008448 [M::mem_process_seqs] Processed 777318 reads in 242.616 CPU sec, 7.793 real sec [M::mem_process_seqs] Processed 776454 reads in 272.733 CPU sec, 8.779 real sec sorting block 69, #reads = 1102919 mem = 536881612 peak = 1093558272 [M::process] read 773182 sequences (100000151 bp) in 2.723 CPU sec, 2.799 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 306633, 10, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (135, 242, 450) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1080) [M::mem_pestat] mean and std.dev: (276.67, 182.67) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1395) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (109, 144, 193) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 361) [M::mem_pestat] mean and std.dev: (155.24, 62.24) [M::mem_pestat] low and high boundaries for proper pairs: (1, 445) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (152, 439, 475) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1121) [M::mem_pestat] mean and std.dev: (257.12, 161.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1444) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (176, 428, 924) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2420) [M::mem_pestat] mean and std.dev: (599.59, 516.43) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3168) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR sorting block 70, #reads = 1106442 mem = 536882484 peak = 1093558272 [M::process] read 771724 sequences (100000159 bp) in 2.376 CPU sec, 2.480 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 306175, 10, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (94, 163, 1393) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3991) [M::mem_pestat] mean and std.dev: (684.59, 1028.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5290) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 145, 196) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 368) [M::mem_pestat] mean and std.dev: (157.17, 63.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 454) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (133, 334, 1253) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3493) [M::mem_pestat] mean and std.dev: (719.90, 792.82) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4613) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (150, 218, 1517) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4251) [M::mem_pestat] mean and std.dev: (740.65, 974.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5618) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 770876 sequences (100000263 bp) in 1.950 CPU sec, 1.947 real sec... [M::mem_process_seqs] Processed 776194 reads in 218.040 CPU sec, 6.920 real sec [M::mem_process_seqs] Processed 773182 reads in 145.119 CPU sec, 4.587 real sec sorting block 71, #reads = 1104814 mem = 536883991 peak = 1093558272 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 305257, 21, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (97, 151, 218) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 460) [M::mem_pestat] mean and std.dev: (161.75, 68.20) [M::mem_pestat] low and high boundaries for proper pairs: (1, 581) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 146, 197) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 371) [M::mem_pestat] mean and std.dev: (158.00, 64.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 458) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (338, 716, 5069) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 14531) [M::mem_pestat] mean and std.dev: (2230.24, 3067.32) [M::mem_pestat] low and high boundaries for proper pairs: (1, 19262) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (224, 244, 720) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1712) [M::mem_pestat] mean and std.dev: (278.22, 178.36) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2208) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 770384 sequences (100000016 bp) in 2.693 CPU sec, 2.793 real sec... [M::process] read 769916 sequences (100000156 bp) in 1.760 CPU sec, 1.761 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 305419, 5, 24) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (152, 299, 913) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2435) [M::mem_pestat] mean and std.dev: (434.80, 385.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3196) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (110, 147, 198) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 374) [M::mem_pestat] mean and std.dev: (158.54, 64.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 462) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (179, 306, 810) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2072) [M::mem_pestat] mean and std.dev: (459.61, 429.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2703) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 771724 reads in 203.553 CPU sec, 6.470 real sec sorting block 72, #reads = 1109033 mem = 536881153 peak = 1093558272 [M::mem_process_seqs] Processed 770876 reads in 137.513 CPU sec, 4.388 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 305168, 11, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (151, 247, 886) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2356) [M::mem_pestat] mean and std.dev: (572.27, 640.88) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3136) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::process] read 768632 sequences (100000190 bp) in 2.618 CPU sec, 2.693 real sec... [M::mem_pestat] (25, 50, 75) percentile: (110, 147, 198) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 374) [M::mem_pestat] mean and std.dev: (158.62, 64.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 462) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (514, 827, 1192) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2548) [M::mem_pestat] mean and std.dev: (774.20, 338.45) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3226) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (138, 226, 2602) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 7530) [M::mem_pestat] mean and std.dev: (1095.25, 1613.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 9994) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 767942 sequences (100000030 bp) in 1.560 CPU sec, 1.561 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 305273, 14, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (361, 956, 956) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2146) [M::mem_pestat] mean and std.dev: (803.89, 529.72) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2923) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 147, 199) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 375) [M::mem_pestat] mean and std.dev: (159.42, 65.32) [M::mem_pestat] low and high boundaries for proper pairs: (1, 463) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (504, 1365, 2424) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6264) [M::mem_pestat] mean and std.dev: (1171.92, 835.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8184) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (157, 404, 2327) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 6667) [M::mem_pestat] mean and std.dev: (1085.18, 1282.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 8837) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 770384 reads in 196.431 CPU sec, 6.252 real sec sorting block 73, #reads = 1109922 mem = 536878367 peak = 1093558272 [M::mem_process_seqs] Processed 769916 reads in 133.589 CPU sec, 4.272 real sec sorting block 74, #reads = 1108313 mem = 536880330 peak = 1093558272 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 304210, 9, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (124, 185, 530) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1342) [M::mem_pestat] mean and std.dev: (257.31, 239.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1748) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 200) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 378) [M::mem_pestat] mean and std.dev: (160.18, 65.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 467) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (108, 217, 523) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1353) [M::mem_pestat] mean and std.dev: (326.88, 300.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1768) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 766696 sequences (100000115 bp) in 2.606 CPU sec, 2.694 real sec... [M::process] read 766144 sequences (100000216 bp) in 2.150 CPU sec, 2.146 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (16, 304611, 6, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (160, 474, 1975) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 5605) [M::mem_pestat] mean and std.dev: (985.62, 926.90) [M::mem_pestat] low and high boundaries for proper pairs: (1, 7420) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (111, 148, 201) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 381) [M::mem_pestat] mean and std.dev: (160.76, 66.36) [M::mem_pestat] low and high boundaries for proper pairs: (1, 471) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (113, 161, 1552) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4430) [M::mem_pestat] mean and std.dev: (719.88, 836.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5869) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 768632 reads in 190.896 CPU sec, 6.053 real sec [M::mem_process_seqs] Processed 767942 reads in 128.042 CPU sec, 4.054 real sec sorting block 75, #reads = 1110812 mem = 536880789 peak = 1093558272 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 303918, 9, 10) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (140, 372, 439) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1037) [M::mem_pestat] mean and std.dev: (338.92, 238.67) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1336) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (161.84, 67.27) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (229, 278, 693) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1621) [M::mem_pestat] mean and std.dev: (424.40, 243.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2085) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 731764 sequences (95689327 bp) in 2.527 CPU sec, 2.569 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (9, 303459, 7, 15) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 149, 203) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 385) [M::mem_pestat] mean and std.dev: (162.17, 67.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 476) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (134, 190, 297) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 623) [M::mem_pestat] mean and std.dev: (176.92, 70.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 786) [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 766696 reads in 188.811 CPU sec, 6.059 real sec sorting block 76, #reads = 1109326 mem = 536883979 peak = 1093558272 [M::mem_process_seqs] Processed 766144 reads in 130.408 CPU sec, 4.205 real sec sorting block 77, #reads = 1109981 mem = 536880766 peak = 1144913920 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 289870, 21, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (141, 219, 342) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 744) [M::mem_pestat] mean and std.dev: (214.67, 109.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 945) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (112, 150, 204) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 388) [M::mem_pestat] mean and std.dev: (163.14, 67.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 480) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (432, 583, 733) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1335) [M::mem_pestat] mean and std.dev: (502.88, 183.79) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1636) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (154, 174, 1037) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2803) [M::mem_pestat] mean and std.dev: (515.06, 508.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3686) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 731764 reads in 104.360 CPU sec, 3.427 real sec os version: Linux 6.12.88 cpu vendor: GenuineIntel signature: 000a06d1 features: bfebfbff 7ffefbff extended: f3bfb7ef fb417ffe amd bits: 2c100800 00000121 brand: Intel(R) Xeon(R) 6975P-C threads: 31 algo: bwa-mem license: sentieon:klib=31 reads: 86710432 overall: 71823896576 mem 14068.885 user 516.074 sys 483.976 real [main] Version: 0.7.17-r1188 [main] CMD: /opt/conda/share/sentieon-202308.03-3/libexec/bwa mem -K 100000000 -Y -R @RG\tID:A23MHWWLT4.1029_IWL-T1-TDNA-1_A23MHWWLT4_1.L006\tPU:L006\tSM:1029_IWL-T1-TDNA-1_A23MHWWLT4_1\tLB:1029_IWL-T1-TDNA-1_A23MHWWLT4_1\tDS:s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta\tPL:ILLUMINA -t 31 ./BWAIndex/Homo_sapiens_assembly38.fasta.64 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz [main] Real time: 484.018 sec; CPU: 14584.968 sec sorting block 78, #reads = 862514 mem = 418944401 peak = 1144913920 uniq header count 1 merging 79 blocks sw version: sentieon-genomics-202308.03 os version: Linux 6.12.88 cpu vendor: GenuineIntel signature: 000a06d1 features: bfebfbff 7ffefbff extended: f3bfb7ef fb417ffe amd bits: 2c100800 00000121 brand: Intel(R) Xeon(R) 6975P-C threads: 31 max 192 algo: util-sort license: sentieon:util=1 output file size: 4923585970 output reads: 87355560 bam_mem_sort: 79 calls 43.730 user 1.390 sys 45.393 real bam_write: 79 calls 25.339 user 1.737 sys 31.973 real execute: 1 calls 25.834 user 1.163 sys 513.944 real merge_files: 1 calls 25.820 user 1.129 sys 29.371 real parse_chunk: 1261 calls 52.603 user 12.328 sys 67.352 real read_chunk: 3435 calls 30.039 user 24.562 sys 423.706 real sort_block: 1 calls 19.261 user 24.072 sys 409.210 real write_chunk: 2172 calls 25.396 user 0.876 sys 28.413 real overall: 3514683392 mem 1145.357 user 54.073 sys 513.965 real ls: cannot access '*.cram': No such file or directory