Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/eae8fe14876ec445cd0e0b5a8377ae/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/3deb87201b3dbfb093e36f83dee947/1029_T05-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/eae8fe14876ec445cd0e0b5a8377ae/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/3deb87201b3dbfb093e36f83dee947/1029_T05-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_T05-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_T05-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 5.5s, est remaining 105.4s, peak mem 3839MB, user 111.0s, sys 6.5s, output queue size 150
progress 10% @chr2:90000001, elapsed 10.0s, est remaining 90.0s, peak mem 5418MB, user 263.8s, sys 11.2s, output queue size 117
progress 15% @chr2:172000001, elapsed 14.6s, est remaining 82.7s, peak mem 8069MB, user 387.7s, sys 14.4s, output queue size 210
progress 20% @chr3:158000001, elapsed 18.7s, est remaining 74.7s, peak mem 8069MB, user 514.1s, sys 19.4s, output queue size 283
progress 25% @chr4:129000001, elapsed 21.8s, est remaining 65.5s, peak mem 8069MB, user 625.7s, sys 20.9s, output queue size 302
progress 30% @chr5:106000001, elapsed 24.4s, est remaining 56.9s, peak mem 8254MB, user 700.2s, sys 21.8s, output queue size 464
progress 35% @chr6:91000001, elapsed 28.3s, est remaining 52.5s, peak mem 8394MB, user 802.5s, sys 23.0s, output queue size 625
progress 40% @chr7:48000001, elapsed 32.8s, est remaining 49.2s, peak mem 8476MB, user 921.7s, sys 24.5s, output queue size 786
progress 45% @chr8:78000001, elapsed 37.7s, est remaining 46.0s, peak mem 9029MB, user 1074.7s, sys 26.2s, output queue size 948
progress 50% @chr9:93000001, elapsed 41.8s, est remaining 41.8s, peak mem 9229MB, user 1187.1s, sys 27.4s, output queue size 366
progress 55% @chr10:118000001, elapsed 46.6s, est remaining 38.1s, peak mem 9575MB, user 1360.6s, sys 29.8s, output queue size 348
progress 60% @chr12:5000001, elapsed 51.1s, est remaining 34.1s, peak mem 9575MB, user 1503.7s, sys 31.4s, output queue size 510
progress 65% @chr13:26000001, elapsed 55.5s, est remaining 29.9s, peak mem 9722MB, user 1601.8s, sys 32.7s, output queue size 672
progress 70% @chr14:71000001, elapsed 58.4s, est remaining 25.0s, peak mem 9772MB, user 1686.2s, sys 33.7s, output queue size 833
progress 75% @chr16:42000001, elapsed 63.6s, est remaining 21.2s, peak mem 9772MB, user 1849.2s, sys 36.3s, output queue size 797
progress 80% @chr17:7000001, elapsed 73.0s, est remaining 18.3s, peak mem 9772MB, user 2108.9s, sys 40.0s, output queue size 623
progress 85% @chr20:36000001, elapsed 83.3s, est remaining 14.7s, peak mem 9856MB, user 2377.7s, sys 43.7s, output queue size 785
progress 90% @chrX:27000001, elapsed 89.3s, est remaining 9.9s, peak mem 10031MB, user 2598.2s, sys 46.8s, output queue size 947
progress 95% @chrY:55000001, elapsed 94.2s, est remaining 5.0s, peak mem 10132MB, user 2720.8s, sys 48.8s, output queue size 1109
progress 100% @chrX:67000001, elapsed 107.4s, est remaining 0.0s, peak mem 10132MB, user 2978.5s, sys 52.1s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 80063761426
reads: 1549027000
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1321.300 user 46.582 sys 1368.176 real
done: 1 calls 0.060 user 0.030 sys 0.099 real
exec_no_coor: 1 calls 0.000 user 0.016 sys 0.021 real
execute: 1 calls 0.004 user 0.002 sys 107.416 real
idle: 351 calls 0.161 user 0.003 sys 331.466 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 10624528384 mem 2979.473 user 52.391 sys 108.909 real