cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_5TB-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:117143588, elapsed 11.5s, est remaining 219.3s, peak mem 6265MB, user 310.4s, sys 7.2s, output queue size 193
progress 10% @chr2:23706481, elapsed 26.2s, est remaining 235.9s, peak mem 9060MB, user 730.2s, sys 11.6s, output queue size 1157
progress 15% @chr2:185788643, elapsed 37.5s, est remaining 212.5s, peak mem 9561MB, user 1043.9s, sys 14.5s, output queue size 286
progress 20% @chr3:99817980, elapsed 49.4s, est remaining 197.6s, peak mem 9590MB, user 1375.1s, sys 16.8s, output queue size 442
progress 25% @chr4:88489166, elapsed 58.6s, est remaining 175.8s, peak mem 9633MB, user 1626.9s, sys 18.6s, output queue size 91
progress 30% @chr5:147509478, elapsed 68.1s, est remaining 158.9s, peak mem 9683MB, user 1887.0s, sys 20.5s, output queue size 205
progress 35% @chr6:131886562, elapsed 81.5s, est remaining 151.4s, peak mem 10169MB, user 2260.2s, sys 23.4s, output queue size 637
progress 40% @chr7:128887215, elapsed 93.4s, est remaining 140.1s, peak mem 10369MB, user 2584.9s, sys 25.7s, output queue size 1468
progress 45% @chr8:127734017, elapsed 106.8s, est remaining 130.6s, peak mem 11053MB, user 2967.5s, sys 28.5s, output queue size 1453
progress 50% @chr10:33254028, elapsed 118.5s, est remaining 118.5s, peak mem 11090MB, user 3293.1s, sys 30.6s, output queue size 105
progress 55% @chr11:48216810, elapsed 128.7s, est remaining 105.3s, peak mem 11203MB, user 3574.2s, sys 32.3s, output queue size 16
progress 60% @chr12:26230711, elapsed 140.7s, est remaining 93.8s, peak mem 11203MB, user 3901.7s, sys 34.7s, output queue size 811
progress 65% @chr13:49551326, elapsed 151.8s, est remaining 81.7s, peak mem 11238MB, user 4216.5s, sys 36.8s, output queue size 571
progress 70% @chr15:42751974, elapsed 162.1s, est remaining 69.5s, peak mem 11238MB, user 4500.8s, sys 38.5s, output queue size 457
progress 75% @chr16:30953185, elapsed 174.4s, est remaining 58.1s, peak mem 11238MB, user 4851.6s, sys 40.9s, output queue size 30
progress 80% @chr17:42698618, elapsed 188.3s, est remaining 47.1s, peak mem 11238MB, user 5243.4s, sys 43.5s, output queue size 705
progress 85% @chr19:5687753, elapsed 199.5s, est remaining 35.2s, peak mem 11238MB, user 5557.4s, sys 45.8s, output queue size 407
progress 90% @chr19:55613619, elapsed 210.7s, est remaining 23.4s, peak mem 11238MB, user 5871.9s, sys 47.8s, output queue size 89
progress 95% @chr22:36520576, elapsed 223.1s, est remaining 11.7s, peak mem 11392MB, user 6219.0s, sys 50.2s, output queue size 28
progress 100% @chrY:25622443, elapsed 230.2s, est remaining 0.0s, peak mem 11392MB, user 6411.8s, sys 51.5s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 89084754634
reads: 1834997666
contig: 201779 intervals 37922265 bases
advance: 208647 calls 3458.592 user 44.023 sys 3619.584 real
done: 1 calls 0.395 user 0.436 sys 0.834 real
execute: 1 calls 0.004 user 0.001 sys 230.239 real
fetch_reads: 208647 calls 375.053 user 0.581 sys 384.805 real
fetch_ref: 207264 calls 0.873 user 1.087 sys 1.842 real
fetch_vcf: 207264 calls 80.858 user 2.078 sys 85.024 real
idle: 92 calls 0.137 user 0.000 sys 34.121 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 560357 calls 2786.048 user 2.371 sys 2861.206 real
overall: 11945713664 mem 6957.356 user 52.999 sys 231.980 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory